Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0311 ATGGTTTGGACTGCCAATGATTTTCCAAAGGGACTCAAGGTTCTTCTCCTTGATGGAGACATAAATTCTGTTGCTGAGACAAAAGCAAAGCTTGAAGCTATGGACTATAATGTTTCTTCCTTCAGCAATGAGAGTGCAGCCTTGTCAGCATTCTTAAGTAGGCCTGAAGACTTCCATGTTGCCGTAGTGGAGGTAAGTACAAGCAGTAGCCAGGGAGGTTTCAAGTTTCTTGAGAACGCGAAGGACTTGCCAACCATTATGACTTCAAACAATCAGTGCTTGAGTACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTCCTCAATAAACCACTCTCGGAGGACAAGCTCAAAAATATCTGGCAGCACGTGGTTCACAAGGCATTCAATGCTGGGGAAAGTGTCCTGCCTGGGTCACTAAAACCTGTTAAAGAATCTTTAGAATCCATGTTGCAGCTCCAAAAGAAAATTGAACAACATGAAAACAAAATGTCAATAGAATTAGATAATGTATCCAGGTTAAGTGATAATGACCATAATCACTATTCTGGAAGTGATAAATATCCTGCTCCTTCAACCCCACAATTGAAACAAGGAGAACGGTTACTGAATGATGGTGATTGCCAAGAGCAGACCAATGTCTCCACAGAAAAAGAAAGTGGGGAACATGATGGTGATTCTATGTCTGTCGACACTTCATGTGAGAATTTGAACAATGAAAATATTACTCAACTAAGGAAACCTGAAAAGACTCTAATCAAGAGGGAAGATGATTCTGCTGATGGTTGCAAGGGTGAGAGTGCTGTTTCTCTGAATCCTCATAATAGAAAGTTTCTCAGCAAGACAGGTGGTAATACTACTTCTCCAAGTAAAGCGATTGTTCCTAGAGATTCGTGTGAGATTAAAGCTAACCGGAAGAAGATGAAAGTAGACTGGACGCCTCAGCTGCACACAAAATTTGTGCAGGCAGTGGAACAACTAGGTGTTGATCAAGCCATTCCCTCTAGAATATTGGAGCTAATGAAAGTTGATGGTTTGACTAGGCATAATGTGGCAAGCCATCTCCAGAAATATAGAATGCAGAAGAGACAAATTGTTCCTAGGGGAGAATGGGCAAATCATAGAGATCCGATCCAAAGGAGCTATGGTGCGCAAAGACCAATTATGGCCTACCCTCCATATCATTCTAACCAGACCCATACTCCAGCTCCTGTATATCCTATTTGGAGACAACCTGTAATCCAAACAGCTGGTGTACAGGTTTGGGGCCATTCCAGTTATCCATTGTGGCAGCCTTTTCCCGGGGTTCACATGGATGCATGGGGTTGCCCAGTGTTGCCACCTCCACAAGCTTCTTGTTTTCCCTACACTCAAGATATGGTTGGATTGCAAAATGCCAAAACAGTGGATTATAGATTTGCCATGCCACAAAATTCCTTTGAGCATCATCCGGCAGAAGAGGTTGTTGACAAGATTGTGAAGGAGGCAATGAGCAAACCATGGCTGCCCTTGCCCTTAGGCCTCAAACCTCCTTCGGCCGATAGCGTGTTGGCTGAGCTCTCAAAGCAAGGCATATCCAGCATCCCTCTTGGAAGCAAGTTTTCTAAACCACACTGA 1620 0.4358 MVWTANDFPKGLKVLLLDGDINSVAETKAKLEAMDYNVSSFSNESAALSAFLSRPEDFHVAVVEVSTSSSQGGFKFLENAKDLPTIMTSNNQCLSTMMKCIALGAVEFLNKPLSEDKLKNIWQHVVHKAFNAGESVLPGSLKPVKESLESMLQLQKKIEQHENKMSIELDNVSRLSDNDHNHYSGSDKYPAPSTPQLKQGERLLNDGDCQEQTNVSTEKESGEHDGDSMSVDTSCENLNNENITQLRKPEKTLIKREDDSADGCKGESAVSLNPHNRKFLSKTGGNTTSPSKAIVPRDSCEIKANRKKMKVDWTPQLHTKFVQAVEQLGVDQAIPSRILELMKVDGLTRHNVASHLQKYRMQKRQIVPRGEWANHRDPIQRSYGAQRPIMAYPPYHSNQTHTPAPVYPIWRQPVIQTAGVQVWGHSSYPLWQPFPGVHMDAWGCPVLPPPQASCFPYTQDMVGLQNAKTVDYRFAMPQNSFEHHPAEEVVDKIVKEAMSKPWLPLPLGLKPPSADSVLAELSKQGISSIPLGSKFSKPH* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0311 539 PANTHER TRANSCRIPTION ACTIVATOR GLK1 6 537 IPR044825 GO:0003700|GO:0045893
Lan6g0311 539 Coils Coil 144 178 - -
Lan6g0311 539 ProSiteProfiles Response regulatory domain profile. 13 126 IPR001789 GO:0000160
Lan6g0311 539 MobiDBLite consensus disorder prediction 175 230 - -
Lan6g0311 539 Pfam Myb-like DNA-binding domain 311 360 IPR001005 -
Lan6g0311 539 Gene3D - 304 366 - -
Lan6g0311 539 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 308 362 IPR006447 GO:0003677
Lan6g0311 539 SUPERFAMILY CheY-like 10 130 IPR011006 -
Lan6g0311 539 SUPERFAMILY Homeodomain-like 307 364 IPR009057 -
Lan6g0311 539 Gene3D - 12 135 - -
Lan6g0311 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 305 364 IPR017930 -
Lan6g0311 539 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 6 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0311 Lan-Chr6 2385255 2391660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0311 1 533 Response Regulator Gene Family AT4G18020 48.522 3.25e-134 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan6g0311 Myb_DNA-binding 4.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0311 - - gmx:100784905 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0380 17 2827162 2836723 Lan6g0311 6 2385255 2391660 LSH
Lan18g0942 18 14657040 14663483 Lan6g0311 6 2385255 2391660 LSH
Lan6g0311 6 2385255 2391660 Lan6g0932 6 8712044 8733097 PCT
Lan6g0932 6 8712044 8733097 Lan6g0311 6 2385255 2391660 PCT