Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0304 ATGTTCAATAACATGGGTTCTACGGTTCGTGAAAAACACATCCGAGCGAATCGTAAAACTCGATCGCAGAAATCTGATTCCAATTCCAATTCCAATTCTCGTTGTAAGTCTATGTTGGATAATAATAAGCCTTGCAAACATCATGTTGATTCGGCATCCAATGAATCTTCTCAAAATCCCAATCCAATTCCAAATCAAAACCCTAATTTTGGTTCATCTGGATGGGGCTTATGCACTGAGGAGCAATTGGAACAAATTCTATCGAAAAACATGGAAAATGTATACAAAGATGCTGTTTCAAAGCTTGTTGCTTTAGGGTATGACGAGGACGTTGCCCTGAAAGCGATTCTGCAGAATGGTTATTGTCACAATGGAATGGATGTGTTAACAAACATTTTGCACAACGCATTGGGTTATTTGAGTAGTAATGAATCTGAGTCAGACTCCGAGTTTGAGTCTCAGACTGTGTTCTCTGACTTGAAGGAGTTAGAGCGGTATACTCTAGCTGCTATGCTGTCTTTGTTGCAACAAGTGAGGCCCAATTTGAGCAGAGGTGATGCCATGTGGTGTTTGCTCGTCACTGATTTCCATGTTGAAAAGGCAGCCACCATTCAAATTCCGGTTCCCGATGGCAATGCAGTTGAGACTGGTAGCACTGATAATTCTAAAAATATATTTGGTCTTATGCCTCCACCTCTATGTACGTTTCACGAAGGATGGGGTTTTGGGAATGGGGGAACCTCGCAGATGGCTTTACAGTTACAAAGAGATATTGAACTCCCAAAGAGGTTTAATCTTTCACCTCAGATGAAGTCATTGTTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCTAACTCTAACCAGTTGCAGATACAACCCAAGGCTGTTCCCAACAGTAGCACTGCATCATCAAATTCGGAGTTTCCAGCTGAGAAGCCTGGCGACTCTCACAATCTGAATAACCTAGATGCTGTGAACTCGGTACTGCTGAGTAAGTTTCCAAATCTAAATCTTGACGAGAAACTGGATTTTGTGGCTGAAGATAAGAAGGGTGAGGTGATAGTCACTCTGTTTCGTCAGATTAAGGATCTTGAGAAACAGGTCAAGGACCGAAAAGAATGGGCACATCAGAAGGCAATGCAAGCAGCAAGAAAGCTGAGCGGAGATCTTACTGAGCTGAAAACACTAAGGATGGAAAGAGACGAGACCCAAAAATTGAAGAAAGGGAAGCGGACCCTTGAGGATACAACCATGAAGAGACTCTCAGAGATGGAGAATAACTTGAGAAAGGCTAGTGGTCAAGTGGACCAGGCAAATGCTGCTGTCAGAAAACTAGAGATAGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCTAAGTTAAGTGCATCAGAGTCAGCCACGGCCTGCCTGCAAGTTGCAAAAAGGGAGAAAAAGTGTTTAAAGAAGCTTCTAGCATGGGAAAAACAGAAAGCTAAGATGCAGCAGGAGATTTCTGATGAAAAACAGAAGATATCAGAGATACAAGAACAGTTGGCTCGGATTAAACAGCGTCAAAAAGAAGCTGAGGTCAAGATAGGGGAGGAGTTGAAGGCCAAGGAGGAAGCATTAGCACTAATTGAGGAGGAACGCCGTGCTAAGGAAGCAGCTGAGGCCAATAATAAGAGAAACCTTAAAGCTTTATGCCTGAACATAGAGATAGATTTCCAGCGTCGCAAGGATGATATCTTAAGGCTTGAGCAGGAGCTGGCACGCCTTAAAGCATCTGCTCAATCTGCTAATCTGCATCATAAATCAAATACTTCACGTACAAGTGAATCTGAGGGTGCAAAGCTCCAAAGAGAGGCAATTGCTAAGCTTATTCAGGACTTCAAAAATATGGAGGATTTTTCAGAAAAAGAAGTCAGCAGTGATAGACAATGCATTATATGCAAGAAAGATGAAGTTTCAATTGTCCTCTTGCCATGTGCACACCAAGTTATGTGTGTTAGCTGCAGTGAAGAGTATGGGAGAAAGGGAAGAGCTGCTTGTCCATGCTGCCGCGTTCCAATCGAACAGAGAATCCGTGTCTTTGGGGCAAGTTCGTAG 2097 0.4282 MFNNMGSTVREKHIRANRKTRSQKSDSNSNSNSRCKSMLDNNKPCKHHVDSASNESSQNPNPIPNQNPNFGSSGWGLCTEEQLEQILSKNMENVYKDAVSKLVALGYDEDVALKAILQNGYCHNGMDVLTNILHNALGYLSSNESESDSEFESQTVFSDLKELERYTLAAMLSLLQQVRPNLSRGDAMWCLLVTDFHVEKAATIQIPVPDGNAVETGSTDNSKNIFGLMPPPLCTFHEGWGFGNGGTSQMALQLQRDIELPKRFNLSPQMKSLLKRNVAMFAAGFRANSNQLQIQPKAVPNSSTASSNSEFPAEKPGDSHNLNNLDAVNSVLLSKFPNLNLDEKLDFVAEDKKGEVIVTLFRQIKDLEKQVKDRKEWAHQKAMQAARKLSGDLTELKTLRMERDETQKLKKGKRTLEDTTMKRLSEMENNLRKASGQVDQANAAVRKLEIENAEIKAEMEASKLSASESATACLQVAKREKKCLKKLLAWEKQKAKMQQEISDEKQKISEIQEQLARIKQRQKEAEVKIGEELKAKEEALALIEEERRAKEAAEANNKRNLKALCLNIEIDFQRRKDDILRLEQELARLKASAQSANLHHKSNTSRTSESEGAKLQREAIAKLIQDFKNMEDFSEKEVSSDRQCIICKKDEVSIVLLPCAHQVMCVSCSEEYGRKGRAACPCCRVPIEQRIRVFGASS* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0304 698 PANTHER OS05G0141500 PROTEIN 5 697 IPR046934 -
Lan6g0304 698 MobiDBLite consensus disorder prediction 51 71 - -
Lan6g0304 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 695 IPR013083 -
Lan6g0304 698 MobiDBLite consensus disorder prediction 23 39 - -
Lan6g0304 698 ProSiteProfiles Zinc finger RING-type profile. 644 684 IPR001841 -
Lan6g0304 698 Coils Coil 424 465 - -
Lan6g0304 698 MobiDBLite consensus disorder prediction 297 322 - -
Lan6g0304 698 Coils Coil 487 528 - -
Lan6g0304 698 Coils Coil 533 563 - -
Lan6g0304 698 Coils Coil 572 599 - -
Lan6g0304 698 Pfam Zinc finger, C3HC4 type (RING finger) 641 689 - -
Lan6g0304 698 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 697 - -
Lan6g0304 698 MobiDBLite consensus disorder prediction 593 614 - -
Lan6g0304 698 MobiDBLite consensus disorder prediction 297 314 - -
Lan6g0304 698 Pfam Family of unknown function (DUF6592) 90 202 IPR046527 -
Lan6g0304 698 SUPERFAMILY RING/U-box 633 690 - -
Lan6g0304 698 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0304 Lan-Chr6 2326492 2330108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0304 582 694 C3H Transcription Factor Family AT1G73950 29.204 2.86e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0304 - - gmx:100777787 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0374 17 2772338 2775942 Lan6g0304 6 2326492 2330108 LSH
Lan6g0304 6 2326492 2330108 Lan17g0990 17 14021724 14034097 PCT
Lan17g0990 17 14021724 14034097 Lan6g0304 6 2326492 2330108 PCT