Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0303 ATGGATTCACGAGAACAGCCACCTCATCACCCTAACGTTATGGTGGGACCCACCTCTTTCCCCAACACGATCCCACCTTCCATTATGGCCCCCGCCACCGCTCGATTCCCTTTCACCTCCATGCCCCACCACCACCACCACCAGCCACCTCCTCCGCCCTCAAATAACAACAACTCTTCCTCCGAACCCTTCACCATCAACAACAACAACAATAACAACAGTGTCGCCCCTTACGAAGACGGTTCCTCTTCGGCATTGAAGCCGTGCGGGTTAACCGCCATTGACTCAGGCAAGAAGAAGAGAGGTCGCCCTAGGAAGTACTCACCTGACGCTGCTAACATTGCTTTAGGTTTGGCTCCCGCCGTAACGCAGCAAGTGTCTCCTCCTCCTTCTGGCGGCAGCTCCGCTCCCTCCTCCGAGCCTCTGGCCAAGAAGCATAGGGGAAGACCACCGGGTTCTGGAAAGAAGCAACTCGACGCGCTTGGAGCTGGTGGCACTGGTTTTACTCCTCATGTAATTTTCGTAGAGACTGGCGAGGACATTGCAGCAAAAGTTGTGGCCTTTTCTCAAGAAGGACCTCGGACAGTTTGCATCCTTTCTGCTCATGGTGCAATCAGCAATATCACCCTTCGACAGCCAACAACGCCTGGGGGTACTGTCACATATGAGGGCCTATTTGAAATTATATCTCTATCAGGTTCAACATTGCTATCTGAAAAGGGTAGTGGTCATAGCAAAATGGATGGCTTGAGTGTGTCCCTTGCAGGCTCTGATGGGCGAGTTTTAGGTGGCATAGTTGCTGGAACGCTCATGGCTGCATCACAAGTACAGGTCATTGTCGGTAGCTTCATTGCTGAGCGCAAAAAATCTAGCTCAAACAACCTGAAATCTGGACCATCAGCGCCATCACCCCAAATGTTAACTTTTGGTGCACCTGCATCTCCAACCAGTCCTACCTCTCAAGGGCCTTCATCCGATTCTTCTGATGACAATGATACTGGACCTGGTCTCTACAATAATGCTCCTCCGCCTATTCATAATATGCCATTGTACCATCACCCGTTATGGGCTGGCCAAACTCAGCAGTGA 1089 0.5142 MDSREQPPHHPNVMVGPTSFPNTIPPSIMAPATARFPFTSMPHHHHHQPPPPPSNNNNSSSEPFTINNNNNNNSVAPYEDGSSSALKPCGLTAIDSGKKKRGRPRKYSPDAANIALGLAPAVTQQVSPPPSGGSSAPSSEPLAKKHRGRPPGSGKKQLDALGAGGTGFTPHVIFVETGEDIAAKVVAFSQEGPRTVCILSAHGAISNITLRQPTTPGGTVTYEGLFEIISLSGSTLLSEKGSGHSKMDGLSVSLAGSDGRVLGGIVAGTLMAASQVQVIVGSFIAERKKSSSNNLKSGPSAPSPQMLTFGAPASPTSPTSQGPSSDSSDDNDTGPGLYNNAPPPIHNMPLYHHPLWAGQTQQ* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0303 362 CDD DUF296 169 283 IPR005175 -
Lan6g0303 362 MobiDBLite consensus disorder prediction 123 163 - -
Lan6g0303 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 285 - -
Lan6g0303 362 MobiDBLite consensus disorder prediction 58 80 - -
Lan6g0303 362 MobiDBLite consensus disorder prediction 124 138 - -
Lan6g0303 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 283 IPR005175 -
Lan6g0303 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 357 IPR039605 GO:0003680
Lan6g0303 362 Gene3D - 170 297 - -
Lan6g0303 362 ProSiteProfiles PPC domain profile profile. 165 305 IPR005175 -
Lan6g0303 362 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Lan6g0303 362 SMART AT_hook_2 98 110 IPR017956 GO:0003677
Lan6g0303 362 MobiDBLite consensus disorder prediction 289 335 - -
Lan6g0303 362 MobiDBLite consensus disorder prediction 289 362 - -
Lan6g0303 362 MobiDBLite consensus disorder prediction 1 108 - -
Lan6g0303 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 27 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0303 Lan-Chr6 2316984 2321515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0303 98 362 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 48.254 1.29e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0303 - - lang:109331997 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0371 17 2747777 2752305 Lan6g0303 6 2316984 2321515 LSH
Lan18g0948 18 14698119 14703414 Lan6g0303 6 2316984 2321515 LSH
Lan6g0303 6 2316984 2321515 Lan6g0920 6 8596219 8599116 PCT
Lan6g0920 6 8596219 8599116 Lan6g0303 6 2316984 2321515 PCT