Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0301 ATGTCTGGTTTAAACTTAGGTACAGCTTCACGCTTTGTTCAAAATCTTCACAGACCAGACTTCAACTTGCAACATCAGCAGCAACAACAACCACAACAAACCGAATCAGAAGAAGACGGAAACCACCGTGACCCATACGAAGATGGACCTCATCAAGGGCTCGAACTCGGCTCTGGCGGCAACGTGGTTACACGCCGCCCACGTGGCCGTCCGGCTGGCTCCAAGAACAAGCCCAAACCACCGGTGATCATAACAAAGGAAAGCGCCAACACGCTGAGGGCTCATATTCTCGAAGTCGGCAACGGCTGCGACGTGTTTGACTGTGTCGCCACCTACGCGCGGCGCAGCCAGCGCGGGATCTGCATCCTTAGCGGCAGTGGGACCGTCACCAATGTCAGCTTACGGCAGCCGGCTGCGGCTGGATCCGTCGTCACCCTCCATGGAAGGTTCGAGATTTTGTCACTCTCTGGGTCCTTCCTTCCGCCGCCTGCTCCGCCAGGAGCAACAAGCTTGACGATATACCTTGCCGGAGGACAGGGGCAGGTGGTGGGAGGGAGTGTGGTTGGAGAATTGACTGCAGCTGGGCCTGTAATTGTGATTGCTGCTTCTTTCACAAACGTGGCTTATGAGCGGTTACCTTTAGATGAAGAAGAAAACCTACAGCCACCTGGCCATGGCGGTGGTCAGGGTTCTGGTGGCGGTGGTGGAGGTATGGGGAACAACAACAGAAACCCTTTTCCGGACCCGTCTTCGGGGCTGCCGTTCTTTAATTTGCCGAATGTTCAGTTACCAGTTGATGGCTGGGCGGGAAATTCAGGTACACGTCCTTCATTTTGA 837 0.5496 MSGLNLGTASRFVQNLHRPDFNLQHQQQQQPQQTESEEDGNHRDPYEDGPHQGLELGSGGNVVTRRPRGRPAGSKNKPKPPVIITKESANTLRAHILEVGNGCDVFDCVATYARRSQRGICILSGSGTVTNVSLRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEENLQPPGHGGGQGSGGGGGGMGNNNRNPFPDPSSGLPFFNLPNVQLPVDGWAGNSGTRPSF* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0301 278 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 206 IPR005175 -
Lan6g0301 278 Gene3D - 92 221 - -
Lan6g0301 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 278 IPR014476 GO:0003680
Lan6g0301 278 ProSiteProfiles PPC domain profile profile. 89 226 IPR005175 -
Lan6g0301 278 CDD DUF296 93 176 IPR005175 -
Lan6g0301 278 MobiDBLite consensus disorder prediction 15 83 - -
Lan6g0301 278 MobiDBLite consensus disorder prediction 15 35 - -
Lan6g0301 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 278 - -
Lan6g0301 278 MobiDBLite consensus disorder prediction 36 50 - -
Lan6g0301 278 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 218 - -
Lan6g0301 278 PIRSF ESCAROLA 8 273 IPR014476 GO:0003680
Lan6g0301 278 MobiDBLite consensus disorder prediction 217 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0301 Lan-Chr6 2309490 2310744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0301 1 278 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.694 3.37e-98 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0301 - - jre:108994023 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0370 17 2738336 2739683 Lan6g0301 6 2309490 2310744 LSH
Lan18g0950 18 14710116 14711559 Lan6g0301 6 2309490 2310744 LSH
Lan6g0301 6 2309490 2310744 Lan17g0993 17 14245770 14247344 PCT
Lan17g0993 17 14245770 14247344 Lan6g0301 6 2309490 2310744 PCT