Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0300 ATGGCCAAAGAGATTGGTGTCTCCCTGGCTCAGATCCAAAAATTGTCACAATCTCAACACAACAAAAACCAACCTCATCTAAACCCGAACTCCACTAGTACTACAAATTCATCTACTTGGATGTGGAATCCTAGGGAACACCCAGAAGATGATGACTCATGGGAGGTTAGAGCTTTTGCTGAAGACACAAAGAACATCATGGGTACAACATGGCCTCCTAGGTCATACACTTGCACCTTTTGTAGAAGGGAGTTCCGGTCAGCCCAAGCTCTAGGCGGCCACATGAACGTGCATCGCCGCGACAGGGCACGCCTCCACCAGGCGCCGTCTTCGACAGGTTCGATTAACCCCAGCTCCTCTCATATTGCACCAGCATTCATAAACATTCCACATCAGGACCTTGATTCAAATGCAGGGTTGCGCTTTCTCTACCACTTTCCAAGCCCTAATGCCACCTTCACTACTGCTCCAAATCACAGCTCTAATCGGAGTGCAAGTGGGAAATCTCCCTCCACTCTTCTCTCCATCTCTTCCTATTCACAAAACAACTTGAAGTTGCAAACTTGCTCGTCAACACTTAACTTTCCGGCAGCACAAGCAACTGCATCTGGGATCAATAATAATGTTTCTTCTTACTGCTACAACAGTACTAGCAAAGTGGAAGAGCCTCCAACTTCTTCCAATGACAATGGCCAACATGAAGAGCTTGATCTAGAGCTCCGCCTGGGAAACAAGCCAAAACCAACCTGA 750 0.4733 MAKEIGVSLAQIQKLSQSQHNKNQPHLNPNSTSTTNSSTWMWNPREHPEDDDSWEVRAFAEDTKNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPSSTGSINPSSSHIAPAFINIPHQDLDSNAGLRFLYHFPSPNATFTTAPNHSSNRSASGKSPSTLLSISSYSQNNLKLQTCSSTLNFPAAQATASGINNNVSSYCYNSTSKVEEPPTSSNDNGQHEELDLELRLGNKPKPT* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0300 249 SMART c2h2final6 76 98 IPR013087 -
Lan6g0300 249 Gene3D Classic Zinc Finger 66 124 - -
Lan6g0300 249 MobiDBLite consensus disorder prediction 215 249 - -
Lan6g0300 249 MobiDBLite consensus disorder prediction 232 249 - -
Lan6g0300 249 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Lan6g0300 249 MobiDBLite consensus disorder prediction 16 52 - -
Lan6g0300 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Lan6g0300 249 MobiDBLite consensus disorder prediction 215 231 - -
Lan6g0300 249 PANTHER OS07G0101800 PROTEIN 37 245 - -
Lan6g0300 249 MobiDBLite consensus disorder prediction 16 43 - -
Lan6g0300 249 PANTHER OS07G0101800 PROTEIN 37 245 - -
Lan6g0300 249 Pfam C2H2-type zinc finger 76 100 - -
Lan6g0300 249 SUPERFAMILY beta-beta-alpha zinc fingers 73 103 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0300 Lan-Chr6 2299669 2300821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0300 36 108 C2H2 Transcription Factor Family AT4G17810 73.418 5.47e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan6g0300 zf-C2H2_6 5.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0300 - - gmx:100818142 274.633