Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0297 ATGGAGAAATTAAACATATCATTAGATGCATCAACAGCTAGCTGGTTAACTGATTTGGAAATAGATGATTACAATTTGTTTCCAGAATACGATATGAGCTTGTTTAATGTTGATGATATAGAGTTCCTTTCGCATGACATAGCAAGTTCCTTGCATCCTTTGCATTCAGATGAGATGAGTTTAGAGAGACCCACCAAGCAGCTCAAAACAAATAGTTGGAACTCATCCAATATCACTGAACATTTTTCACCTGATCTTTCTTCCTCTTCTTCTCCCACCACCACCACTTCCCATAATTTGTATTTTGAAAACTCAAACTCATCACATGTCAACACCTTAAACCCAAAACAGAACGACCTTGTCTCAGTGTCACAGCCACAAGAGAGAAACACCAACTTGATGGCACAAACAAGAAAAGGGACATCTGAAAACCAAAGCAAAGGTACTAAGAGGTCCTCTTCTCACGGTCATAATCACATCATTGCTGAGAGAAAACGAAGAGAGAAATTGAGCCAGAGCTTAATTGCTCTTGCAGCTCTAATTCCTGGCTTGAAAAAGATGGACAAGGCTTCAGTCCTTGGGGATGCAATAAAATACATGAAAGATCTCAAAGAACGGTTGAGATTGTTGGAAGAAGAGAGTAAGAAAAGAGTGGTAGAGTCTGTGGTGATTGTAAATAAACCACAGGTCAGCGGTGATGATGATTCCTCGTCATGTGATGAAAGTGAAGCACTTCCTCATGTAGATGCAAGAGTTTCAGACAAGGAAGTGCTCCTTCGGATCCATTGCCATAAGCAAAAGGGTATTTTGGTCAAAATACTAGACCACATTCAAAAACTTCATCTCTTTGTTGTCAATAGCACTGTCCTACCTTTTGGGAAGAATTCTATTATTGACATAACCATTGTTGCTAAGATGGGCACAGGTTACAACTTGACCTTAAAGGATCTTTTAACAAAACTGCGCGTGGCTACATTGAAATCCATGTCCTAA 993 0.3948 MEKLNISLDASTASWLTDLEIDDYNLFPEYDMSLFNVDDIEFLSHDIASSLHPLHSDEMSLERPTKQLKTNSWNSSNITEHFSPDLSSSSSPTTTTSHNLYFENSNSSHVNTLNPKQNDLVSVSQPQERNTNLMAQTRKGTSENQSKGTKRSSSHGHNHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYMKDLKERLRLLEEESKKRVVESVVIVNKPQVSGDDDSSSCDESEALPHVDARVSDKEVLLRIHCHKQKGILVKILDHIQKLHLFVVNSTVLPFGKNSIIDITIVAKMGTGYNLTLKDLLTKLRVATLKSMS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0297 330 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 6 330 - -
Lan6g0297 330 SMART finulus 160 209 IPR011598 GO:0046983
Lan6g0297 330 MobiDBLite consensus disorder prediction 81 159 - -
Lan6g0297 330 PANTHER BHLH TRANSCRIPTION FACTOR 6 330 - -
Lan6g0297 330 Coils Coil 193 220 - -
Lan6g0297 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Lan6g0297 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 216 IPR036638 GO:0046983
Lan6g0297 330 MobiDBLite consensus disorder prediction 81 151 - -
Lan6g0297 330 Gene3D - 142 205 IPR036638 GO:0046983
Lan6g0297 330 Pfam Helix-loop-helix DNA-binding domain 158 203 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0297 Lan-Chr6 2276081 2278140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0297 12 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.237 9.81e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g0297 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0297 - - gmx:100788128 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0297 6 2276081 2278140 Lan17g0994 17 14320597 14324380 PCT
Lan17g0994 17 14320597 14324380 Lan6g0297 6 2276081 2278140 PCT