Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0296 ATGACATCAATAGAGGAGGAGTCATGGACAAGTTGGTTGTGTGATTTGGATGCTGAAGACTACAGTTTCATCAATGAATCAGACACAAACATGGTTGAGGGAAGTTTTCCATCTCCTAATAATGATGTAGTCCCAACAATACAAGAGGAGAACTCAGAAAGCCAACTTTCTTATGCAACCTTCAACACTGAAAACTCCAGCACTATGAGCAATTGGGATGATAATAGCAGCAATTTTGAGAGGCCTGCCAAGGTAATGAAGATTAGCACCACTTCAAACACTGGGTACTTTTCACAGAAGGACTCTACTCCCTCTTCATATATTCTCTCCTTTGACAATGTGAATCCAGAACCAATATTTCTGAGCACTGATCCCAACTTGAAGCCAAAAGCCAAGGTTGTGAATGAACCAAAACGCAATATTATTCAGGAGGGGAGAAAGAAGTGTGTCTCGGTGAACAGATCTCCTCACCATGCTCAAGATCACATAATTGCTGAGAGAATGAGAAGAGAAAGGATTAGCCACCAGTTCATAGCTCTTTCAGCCCTTATTCCAGGCCTTAAAAAGACAGACAAGGCTACTGTGCTTGCGGATGCTATAAAACACGTGAAAGAGCTTCAAGAACAAGTGAAAGTACTGGAAGATCAGGCCAAAAGAAAACGAGTAGAATCAGTGATATATGTTGAGAAATCTAAGGTTTCATCCTCGGAAGATGTCTCAGACACGTCGTCAAATTCCGGTGATGGAAACTCCGATGACCCTTCATCAAAAACAACTCGATCATTACCAGAAATCGAGGCAAGGGTATCAGAGAAGAACGTGCTGATTCGGATCCACTGCGAGAAACAAAAAGGAATTCTGGTAAACATACTCAAAGAGATAGAGAAGCTTCATCTCTCAGTTATCAATAGCAGTGCATTGCCTTTTGGGACCTCCATTATGGACATAACAATCATAGCAGAGATGGATGGTGATTTCAGCATGAGCGTGAAGGAGCTAGCTAGAAGCCTCAGAATGGGACTCTTGAAATTTAGTAGTAGTTAA 1044 0.4167 MTSIEEESWTSWLCDLDAEDYSFINESDTNMVEGSFPSPNNDVVPTIQEENSESQLSYATFNTENSSTMSNWDDNSSNFERPAKVMKISTTSNTGYFSQKDSTPSSYILSFDNVNPEPIFLSTDPNLKPKAKVVNEPKRNIIQEGRKKCVSVNRSPHHAQDHIIAERMRRERISHQFIALSALIPGLKKTDKATVLADAIKHVKELQEQVKVLEDQAKRKRVESVIYVEKSKVSSSEDVSDTSSNSGDGNSDDPSSKTTRSLPEIEARVSEKNVLIRIHCEKQKGILVNILKEIEKLHLSVINSSALPFGTSIMDITIIAEMDGDFSMSVKELARSLRMGLLKFSSS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0296 347 SMART finulus 163 212 IPR011598 GO:0046983
Lan6g0296 347 Gene3D - 153 220 IPR036638 GO:0046983
Lan6g0296 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Lan6g0296 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 223 IPR036638 GO:0046983
Lan6g0296 347 Pfam Helix-loop-helix DNA-binding domain 161 207 IPR011598 GO:0046983
Lan6g0296 347 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 342 - -
Lan6g0296 347 MobiDBLite consensus disorder prediction 236 264 - -
Lan6g0296 347 CDD bHLH_AtNAI1_like 157 231 - -
Lan6g0296 347 MobiDBLite consensus disorder prediction 236 263 - -
Lan6g0296 347 PANTHER BHLH TRANSCRIPTION FACTOR 5 342 - -
Lan6g0296 347 Coils Coil 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0296 Lan-Chr6 2270166 2272858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0296 10 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.177 1.70e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g0296 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0296 - - lang:109348843 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0368 17 2725990 2727861 Lan6g0296 6 2270166 2272858 LSH
Lan6g0296 6 2270166 2272858 Lan6g0918 6 8567469 8569539 PCT
Lan6g0918 6 8567469 8569539 Lan6g0296 6 2270166 2272858 PCT