Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0289 ATGGGTCATGATCAAAATCCCAGTAGCTCAGGCCTTCATCTTGTTCTAGGGCTATCTTTAACTACAGAAGAAACCACCACCACTCCACCTCCACCCACCATGGTTGATGATCATCTTTATCTTCTTAAGCCCACGCCAATGAAGCCCTATTTCTCCAGTTTTACCACTGAGACCGAGCCATCTTTAACGTTGGGCCTTTCAAGTACTGAGAGTTACCTGAACCAACAACATGTGGCTAAGAATAAGATGGATGGGAATCACAAACCACACGGTGAGGATCCTGTTGATTTATCTAGTCATGAAGCTTCACCTCACAGCGTTGCTTCGTCTTTCTCCACCGGGAGGGTGGTGAAGAGAGAAAGGGATCCTAGCTGTGAAGATGTAGAAGCAGAGGCAACAGAAAGGTTTTCTTCAAGAGTGAGTGATGAAGATGAAGACGGCACTAATGCCAGAAAGAAGCTCAGGCTTACTAAAGAACAATCTGCGTTACTCGAAGAGAGCTTCAAACAACACAACACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGACAGCTACATCTAAGGCCTCGACAGGTTGAAGTGTGGTTTCAAAATCGTAGAGCTAGAACAAAACTGAAGCAAACAGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGTGAAACATTGACAGACGAGAACAAGCGTCTGAAGAAGGAGCTTCAGGAGCTGAAGACACTGAAACTGGCTCAGCCCATGTACATGCCTATGCCTGCAGCCACCCTCTCCATGTGCCCTTCTTGCGACAGAATCGGCCGCGGCGTTAGCAATGGCGGTTCCAATAAAAGCCCCTTCTCCATGGCTCCCAAGCCTCACTTCTACAACCCCTTCACTAATTACTCTGCAGCATGTTGA 894 0.4698 MGHDQNPSSSGLHLVLGLSLTTEETTTTPPPPTMVDDHLYLLKPTPMKPYFSSFTTETEPSLTLGLSSTESYLNQQHVAKNKMDGNHKPHGEDPVDLSSHEASPHSVASSFSTGRVVKRERDPSCEDVEAEATERFSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHNTLNPKQKQALARQLHLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENKRLKKELQELKTLKLAQPMYMPMPAATLSMCPSCDRIGRGVSNGGSNKSPFSMAPKPHFYNPFTNYSAAC* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0289 297 SUPERFAMILY Homeodomain-like 138 208 IPR009057 -
Lan6g0289 297 MobiDBLite consensus disorder prediction 82 99 - -
Lan6g0289 297 Pfam Homeodomain 151 205 IPR001356 GO:0003677
Lan6g0289 297 SMART HOX_1 149 211 IPR001356 GO:0003677
Lan6g0289 297 ProSiteProfiles 'Homeobox' domain profile. 147 207 IPR001356 GO:0003677
Lan6g0289 297 Gene3D - 155 205 - -
Lan6g0289 297 PANTHER - 12 297 - -
Lan6g0289 297 SMART halz 207 250 IPR003106 GO:0006355|GO:0043565
Lan6g0289 297 ProSitePatterns 'Homeobox' domain signature. 182 205 IPR017970 GO:0000981|GO:0006355
Lan6g0289 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 12 297 - -
Lan6g0289 297 MobiDBLite consensus disorder prediction 82 152 - -
Lan6g0289 297 MobiDBLite consensus disorder prediction 1 32 - -
Lan6g0289 297 Pfam Homeobox associated leucine zipper 207 240 IPR003106 GO:0006355|GO:0043565
Lan6g0289 297 Coils Coil 213 243 - -
Lan6g0289 297 MobiDBLite consensus disorder prediction 1 34 - -
Lan6g0289 297 CDD homeodomain 151 208 IPR001356 GO:0003677
Lan6g0289 297 MobiDBLite consensus disorder prediction 115 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0289 Lan-Chr6 2216273 2218042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0289 1 297 Homeobox Transcription Factor Family AT4G37790 54.194 1.91e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan6g0289 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0289 K09338 - gmx:100795135 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0960 18 14764695 14766314 Lan6g0289 6 2216273 2218042 LSH
Lan6g0289 6 2216273 2218042 Lan6g0913 6 8515355 8517320 PCT
Lan6g0289 6 2216273 2218042 Lan17g1001 17 14606649 14609407 PCT
Lan6g0913 6 8515355 8517320 Lan6g0289 6 2216273 2218042 PCT
Lan17g1001 17 14606649 14609407 Lan6g0289 6 2216273 2218042 PCT