Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0279 ATGCCGATGTATCAGCCTTGTAAGAGGAACATGGTTGTTTTTGGGTTTGAGGGTGGTGGTGAAGGCCAGATTCTAGATCTGGATACTGCAGTCAAAGGTGGTATTTTGGGTGGTGGTGTTGTTGGAACTGGGGTTTGTGATAAATTGGATCTTAGAAAAATGATTGAAGAGCTTGACTTGTCTGATGTTCCTACAGTGTTCATTTGCCCAATCTCCCTTGAACCAATGCAAGACCCTGTGACCCTTTGCACTGGCCAAACCTATGAGAGGTCTAACATTCTCAAATGGTTCAATCTGGGGCACTTTACATGCCCCACTACGATGCAAGAGCTTTGGGATGATTCCATTACTCCAAACACCACCCTTCACCGCTTGATTTACACTTGGTTCTCTCAGAAGTACATGCTCATGAAGAAGAGATCGGAGGATGTGCAGGGAAGGACTTCGGAGCTTCTGGAAACGCTGAAGAAGGTTAAGGGTCAGGCTAGAGTTCAAGCACTCAAGGAGCTTCACGAAGTTGTCTCTGCTCATTCCACTGCCCGAAAGTCCGTGATTGATCAAGGTGGAGTATCTATTATGTCCTCATTACTTGGCCCTTTTACTTCACATGCTGTTGGTTCCGAAGTCATTGGCATTCTTGTAAGTTTGACACTTGATTCAGAATCCAAAAAGAATCTAATGCAGCCTGCTAAAATTTCATTGATGGTGGATATCTTAAATGAGGGTTCAATTGAGACTAAAATCAATTGCACACGACTATTGGAATCGTTGATTGACGATAAGGATTTTCAGGGTGAGATTATCTCAAGCCATAGCCTCTTGGTTGGGTTGATGAGGCTTGTGAAGGACAAGAGAAGAAGAAATGGAATCTGTTCAGGACTAAGTCTTCTCAAAACTATATCATTGCATAAAGAAGTTAGGAACTTGCTAGTGAGTATTGGGGCTGTTTCTCAATTGGTTGAATCGTTATCTGGTTTGGACCCTAATTGTTTGGAATTAGCACTTTGTGTTTTAGATGCATTGGCATCTATACCTGAAGGCAGAGTAGCTTTGAAGGATTGTTCTAATGCCATAACCATCATGGTGAAACTGTTGATGAGGATCTCAGAGAATTGCACCCAATATGCATTGTCAATCCTGTGGTCTGTGTGCAAGCTTTCACCTGAGGAGTGCTCATCTATTGCTGTGGATGCAGGGCTTGCCGCAAAACTTCTCCTTGTTATTCAAAGCGGTTGCAATCCTGTTTTAAAACAACAGTCTGCTGAGCTTTTGAAGCTGTGTAGTTTAAATTATTCCGATACCATCTTCATTTCCAAGTGCAAGCTCACCAGAACCATTCAATGA 1344 0.4271 MPMYQPCKRNMVVFGFEGGGEGQILDLDTAVKGGILGGGVVGTGVCDKLDLRKMIEELDLSDVPTVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSITPNTTLHRLIYTWFSQKYMLMKKRSEDVQGRTSELLETLKKVKGQARVQALKELHEVVSAHSTARKSVIDQGGVSIMSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLLESLIDDKDFQGEIISSHSLLVGLMRLVKDKRRRNGICSGLSLLKTISLHKEVRNLLVSIGAVSQLVESLSGLDPNCLELALCVLDALASIPEGRVALKDCSNAITIMVKLLMRISENCTQYALSILWSVCKLSPEECSSIAVDAGLAAKLLLVIQSGCNPVLKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0279 447 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 37 446 - -
Lan6g0279 447 Gene3D - 137 442 IPR011989 -
Lan6g0279 447 SUPERFAMILY ARM repeat 134 432 IPR016024 -
Lan6g0279 447 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Lan6g0279 447 PANTHER WDSAM1 PROTEIN 37 446 IPR045185 GO:0061630
Lan6g0279 447 SUPERFAMILY RING/U-box 57 133 - -
Lan6g0279 447 CDD RING-Ubox_PUB 67 109 IPR045210 -
Lan6g0279 447 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Lan6g0279 447 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Lan6g0279 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 136 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0279 Lan-Chr6 2134936 2137604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0279 1 447 U-box Gene Family AT3G49810 73.274 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0279 - - gmx:100779827 765.763