Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0245 ATGGGAGGTGATGGTGCAGTTCAGGCTACGGATTCCGCAGCCAATGGAGAAGGTGTTGGTATTAATATTCGATGCTCCAATGGTTCCAAGTTTAATGTTCAGGTTAATCTCGATTCCACCGTTGGATCCTTCAAGGAAATCGTAGCTCGCAACTCTGATATCCCTGCTGAACAACAACGTCTGATTTACAAGGGTCGCATCCTCAAGGATGATCAAACCCTCAAAAGCTATGGTTTGGAGGCAGATCATACCATCCACTTGGTTCGCGGCTTTGCTCCTAGCAATACAACTGGTGGGACCAATACCGGCAGTGCCAACACCATAGTGAATAATACGAGTGGCGCTAGTGCTAATGAGGGCGACGGTTTAGGAGGGCCTGGTGTTGGAGCATCACTGTTTCCTGGGCTTGGTATCAACGGATTGGGGGGCAGTGGTTTATTTGGAGAAGGCTTTCCCGACCTAGAACAAATGCAACAACCATTTCTTTCAAATCCCAATACAGTGGGGGAAATAATGAACACTCCCGCTATGCAGAATTTAATAAATAATCCCGAGATAGTGCGAAATCTTATAATGAATAACCCACAGATGCAAGAGCTCGTGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCCAACACTCTTCGTCAGACACTTGAAGCTACTAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTTAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTGAATGCCACCACAATGGGTGGTAATACAGGAAGTGGTACCACATCGATCTTGGGGACGCAAGGTGGCCAAGTCAGGAACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTTCCCCCGTACCCAATACTAACCCACTTCCCAATCCTTGGTCTTCAACTGGAACTGGAGTTGCCCAAAACAATACAATAAGGCCAACTACCGGTGGGGATACTCGACAGCAGACACCTACAGGTTTAGGAGGGCTTGGCCTACCAAATCTTGAAGGCATGTTCGGCGGTATGCCAGATGCTGCTTTAATGACACAGTTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATGCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTGCCAATGCTGGGCAGCGTGGCATGCCTGATATGAATTCCCTTAGAGAAGTCATGCAAAACCCAGAGTTTCTTCGCCTGTTTTCCTCACCTGAGACACTGCAGCAACTTATGTCTTTCCAGCAAACTTTTCTGTCTCAGCTGGGTCAGCAACAATCAACTCGGGAACCTGGTCAAACTGGTGCTGGCACTGGACCATTGAATAACATGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAACTGGCAACTTAGCTGTTCCAAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCACAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATTAGGGCTCTTATTGCTACCTCAGGGAATGTTCATGCAGCTGTTGAGCGGCTTCTAGGGAACTCTGGTGGAGGACAGTAG 1623 0.4646 MGGDGAVQATDSAANGEGVGINIRCSNGSKFNVQVNLDSTVGSFKEIVARNSDIPAEQQRLIYKGRILKDDQTLKSYGLEADHTIHLVRGFAPSNTTGGTNTGSANTIVNNTSGASANEGDGLGGPGVGASLFPGLGINGLGGSGLFGEGFPDLEQMQQPFLSNPNTVGEIMNTPAMQNLINNPEIVRNLIMNNPQMQELVDRNPELAHILNDPNTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMGGNTGSGTTSILGTQGGQVRNQSTNPSTTSSEATSPVPNTNPLPNPWSSTGTGVAQNNTIRPTTGGDTRQQTPTGLGGLGLPNLEGMFGGMPDAALMTQLMQNPAISQMMQSMLSNPQTMNQILGANAGQRGMPDMNSLREVMQNPEFLRLFSSPETLQQLMSFQQTFLSQLGQQQSTREPGQTGAGTGPLNNMGLEMLSSMFGGLGTGNLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGGGQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0245 540 PANTHER UBIQUILIN 9 537 - -
Lan6g0245 540 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Lan6g0245 540 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Lan6g0245 540 Pfam UBA/TS-N domain 496 532 IPR015940 -
Lan6g0245 540 CDD Ubl_Dsk2p_like 19 91 - -
Lan6g0245 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Lan6g0245 540 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 9 537 - -
Lan6g0245 540 Gene3D - 189 247 - -
Lan6g0245 540 CDD UBA_PLICs 496 534 - -
Lan6g0245 540 SUPERFAMILY Ubiquitin-like 11 101 IPR029071 -
Lan6g0245 540 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Lan6g0245 540 MobiDBLite consensus disorder prediction 267 344 - -
Lan6g0245 540 SMART CBM 352 394 IPR006636 -
Lan6g0245 540 SMART CBM 397 432 IPR006636 -
Lan6g0245 540 SMART CBM 144 181 IPR006636 -
Lan6g0245 540 SMART CBM 194 233 IPR006636 -
Lan6g0245 540 SMART uba_6 496 534 IPR015940 -
Lan6g0245 540 SMART ubq_7 19 90 IPR000626 GO:0005515
Lan6g0245 540 Gene3D - 478 539 - -
Lan6g0245 540 Gene3D - 8 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0245 Lan-Chr6 1834431 1840640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0245 21 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.353 1.21e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0245 K04523 - gmx:100776447 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0154 17 962778 967743 Lan6g0245 6 1834431 1840640 LSH
Lan18g0086 18 634544 639458 Lan6g0245 6 1834431 1840640 LSH
Lan6g0245 6 1834431 1840640 Lan18g0086 18 634544 639458 PCT
Lan18g0086 18 634544 639458 Lan6g0245 6 1834431 1840640 PCT