Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0213 ATGTTCGCCTCTGCATCTTTTCCTTCATCTCTCACTGCCGCTAATCTCTCCGGCAACGCCGTAGCTCCCCCGCCATGCCGCGTCAGATCACGTCCAATTGTCGCTTTTGCCACAGCCACCGCTACCTCCACTGCTGAAGCTCGCTCTACCTGGACGGAGCAACCTAGGTATCCGTCGTATCTGAACCAACACGGCATTTCCTCTGCATCGCTCTACGAGATTCTAGGCATTCCCGCCGCCGCCTCCGATCAGGAGATAAAGGCAGCGTATCGGCGATTGGCCAGGGTTTGCCACCCTGACGTGGCGGCAATTGATCGGAAGAAGTCTTCGGCGGACGACTTTATGAAGATTCACACCGCGTACTCCACCCTTTCTGATCCTGAAAAGCGCGCCACTTACGATCGGAGCCTCATACGCCGGAGACAACGACCGTTGTCGACGGCATCTATGGTTTCGGGCTACACGAGTCGGAACTGGGAAACAGACCAGTGCTGGTAG 498 0.5663 MFASASFPSSLTAANLSGNAVAPPPCRVRSRPIVAFATATATSTAEARSTWTEQPRYPSYLNQHGISSASLYEILGIPAAASDQEIKAAYRRLARVCHPDVAAIDRKKSSADDFMKIHTAYSTLSDPEKRATYDRSLIRRRQRPLSTASMVSGYTSRNWETDQCW* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0213 165 CDD DnaJ 72 126 IPR001623 -
Lan6g0213 165 PANTHER - 1 165 - -
Lan6g0213 165 SUPERFAMILY Chaperone J-domain 33 133 IPR036869 -
Lan6g0213 165 ProSiteProfiles dnaJ domain profile. 70 137 IPR001623 -
Lan6g0213 165 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 165 - -
Lan6g0213 165 SMART dnaj_3 69 129 IPR001623 -
Lan6g0213 165 PRINTS DnaJ domain signature 72 90 IPR001623 -
Lan6g0213 165 PRINTS DnaJ domain signature 90 105 IPR001623 -
Lan6g0213 165 PRINTS DnaJ domain signature 109 129 IPR001623 -
Lan6g0213 165 Gene3D DnaJ domain 59 157 IPR036869 -
Lan6g0213 165 Pfam DnaJ domain 71 134 IPR001623 -
Lan6g0213 165 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0213 Lan-Chr6 1607554 1608368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0213 72 134 C2H2 Transcription Factor Family AT1G74250 43.284 1.02e-08 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0194 17 1252881 1253685 Lan6g0213 6 1607554 1608368 LSH