Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0195 ATGCGAACACTTTGTGATGCTTGTGAAAGCGCAGCCGCTATTGTTTTCTGTGCTGCTGATGAGGCCGCTCTGTGTCGTGCCTGTGATGAGAAGGTTCACATGTGTAATAAGCTAGCTAGCAGGCATGTAAGGGTTGGTCTTGCAAGTCCAAGTGCCGTGCCTCGCTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGCGACACAGATGGAAGTTCCCTTTGTCTGCAGTGTGATATGTTAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTTTTCCGGCAAAGAGTTGAGTTTCCAGGAGATAAACCTAGTCTTGCTGGAAACTCTCATTCGCAAACTGTGGAACCTGGTGAGACTAAAAGAGGGCAAAATTCACTTCCTAGACTAAAGATGGGAGATAAGCAACAAAATCACATGATGCTTTCATCGCCAGAACCTGGTGCTGATGGTCAGGCTAAGATGGAAACTGAAATGTTTGATTTGAACATGAATCCTAACAAAATACATGAACACCTATCTAATAACCAGCAATAA 549 0.4372 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSAVPRCDICENAPAFFYCDTDGSSLCLQCDMLVHVGGKRTHGRYLLFRQRVEFPGDKPSLAGNSHSQTVEPGETKRGQNSLPRLKMGDKQQNHMMLSSPEPGADGQAKMETEMFDLNMNPNKIHEHLSNNQQ* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0195 182 CDD Bbox1_BBX-like 4 47 - -
Lan6g0195 182 MobiDBLite consensus disorder prediction 106 134 - -
Lan6g0195 182 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Lan6g0195 182 Pfam B-box zinc finger 53 91 IPR000315 GO:0008270
Lan6g0195 182 SUPERFAMILY B-box zinc-binding domain 49 86 - -
Lan6g0195 182 MobiDBLite consensus disorder prediction 110 125 - -
Lan6g0195 182 Gene3D Classic Zinc Finger 2 91 - -
Lan6g0195 182 CDD Bbox1_BBX-like 56 96 - -
Lan6g0195 182 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lan6g0195 182 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lan6g0195 182 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lan6g0195 182 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 181 - -
Lan6g0195 182 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lan6g0195 182 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0195 Lan-Chr6 1421540 1426635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0195 1 181 C2C2-CO-like Transcription Factor Family AT4G38960 62.431 8.53e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lan6g0195 zf-B_box 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0195 - - lang:109348718 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0207 17 1387702 1389320 Lan6g0195 6 1421540 1426635 LSH