Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0194 ATGGAACAACAACCACCTCTCTTGAATCAAGGTGCTGCTATGGATTTGAGGGATCTCGCTCTCGCCGCGGATAAAGAGAGTAATTTTGACGGCACCGCTTTGAAAAAGAAACGTGGTCGTCCAGCTAGGGGTACTTCCAAATCGGCACCGCCATCGAGGCCGAAGAAGGAAGAAGAAGACGTTTGCTTTATTTGCTTTGACGGTGGAAGCCTTGTTCTCTGTGATCGCAGGGGTTGCCCTAAAGCGTATCATCCTGCGTGTATTAAACGAGATGAAGCTTTTTTCAGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGCAGTGTGTGTCAGAAGGCATCCCATTATATGTGCTACACTTGTACATATTCTTTGTGCAAGGGCTGTACAAAATCCTCTGATTTTGTCAGTGTCAGAGGAAATAAAGGCTTTTGTGGACTATGCATGAAAACTATAATGCTGATCGAGAATAATGCCCAGGGAAACGATGCAAAGTGTGAAGTGGATTTCGATGACACAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGACAGCTTTGAAAGGGGAGACATCTTTAACATTGGATGAGCTCCTTCAAGCTAAAAACCCATGGAGGGCTCTGAGTTGTAAGCCAGGAACTCCACATGAACTTTATCATGTTAAAGATGATAAAGGTTCTGGATCTAAAAACTCCTTTGTAGACATAGAATCAGATAATTTAAATAACAAGAAGCCTAAGAGAGGTGTTGCACATATACATGTTGTGGATGGTGTCTTGAATGATGTTAGATGCCACACAGAAGACTTGCCCATTACGCGTGATCTGATCGGTGGTATATGCATACACAACAATCAGATCAACCCTAGTGATGCATCAATAGGCGGTAGCACTAATATAGGAGTTGTGAGATCAGAATCGTCTGATGTCGCATTGGACATGTCATCATTGCTTCTCTCTACAGGGATTGAGAAGTCACTTGCTGATTCTGTGAATGATAAATTGTGGCATTATCAAGATCCAGCTGGGAAGGTTCAAGGGCCTTTTTCTATGCTGCAGTTGTACAAGTGGAAAGCAAGTGGGCATTTTCCTTCAGATCTGAGAATATGGAGGATGGATGAGAAACAAGATTATTCTATATTGTTAACTGATGCACTAGATGGGAAGTGTTCCAAAAATGTGTTATTGCCACACAATAGCCAACTGCTGTCGTTAGGTCCCAGTGTCACTTTTGATAATAAAGATAATAGTCAGGATAGTGGGAGAAATGCATCAAAGAATGAATTTCATGGAGAGAGCCGAGTTATCGAGCATTTTGGGGAGCAAAAGGTGTATGATGCTTGTAGACAGTCCAATGGTAAAGATGAATCTGTTAGGAGCAACAAATGGAATTCTTATTCTTCCACACCAGCAGATGGGATTAACAATGAGGGGCAAAGTGGAAACTTAGAAGGGAGAGAAGAGTCATCGAAATGCAGAAATCCTTGTCACAACCAGCCCCATGTATACCCCTCACTACCTTCAACTGCCTTTTCTGTGAATTTAAATGAGAACCCTTTGGATAAATTAAGGGAAGGTTATGGGATTGAGGCAAACCCTGAAGATAATGGAAATTATGGCTTGAATAGGATTTCTGAAGATCAGGGTAAAAGTGGGCAGAGATACCAGAAACAGTCAGATAGTGAAGAGAACTCAGGGCAATCTTCTGGTCAGAACTGGGAATGCCCTCAAGTAATTAATCCAGTGTGTAATGCATCGACATGGCTGGCAATCTTTGGTGAACCTACTGATTGTGATGAATCAGTTTCTGATCTATTGGCGGAAGTGGAGGCAATGGAGTCACGTGGTGGCGGTGTGGAATCTCCCACTTCAATCATGAAAGGTGTTGAAGAATTAACTGATGGTTCTAAAACTGATTTTCTTAGTTTTGTAGATGGGTTTAGCTCAATGCTTGATGCAAGTAAAGGTAATGCACTGACCTCTACAGTTGATTTACACTTGCCATCTCAACCCACAGCAGCAGCGGAACCATTTCGTCGAACTGATGCATTTCATAATCCTCAGAGAATATCTGGGGTGAATTCCTCAAAAAGTTCTGAAGTTGAGGTTAACGAGGCAGATCGGATCGGAGGCCATTCTTGA 2145 0.4247 MEQQPPLLNQGAAMDLRDLALAADKESNFDGTALKKKRGRPARGTSKSAPPSRPKKEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFSSKAKWNCGWHICSVCQKASHYMCYTCTYSLCKGCTKSSDFVSVRGNKGFCGLCMKTIMLIENNAQGNDAKCEVDFDDTSSWEYLFKVYWTALKGETSLTLDELLQAKNPWRALSCKPGTPHELYHVKDDKGSGSKNSFVDIESDNLNNKKPKRGVAHIHVVDGVLNDVRCHTEDLPITRDLIGGICIHNNQINPSDASIGGSTNIGVVRSESSDVALDMSSLLLSTGIEKSLADSVNDKLWHYQDPAGKVQGPFSMLQLYKWKASGHFPSDLRIWRMDEKQDYSILLTDALDGKCSKNVLLPHNSQLLSLGPSVTFDNKDNSQDSGRNASKNEFHGESRVIEHFGEQKVYDACRQSNGKDESVRSNKWNSYSSTPADGINNEGQSGNLEGREESSKCRNPCHNQPHVYPSLPSTAFSVNLNENPLDKLREGYGIEANPEDNGNYGLNRISEDQGKSGQRYQKQSDSEENSGQSSGQNWECPQVINPVCNASTWLAIFGEPTDCDESVSDLLAEVEAMESRGGGVESPTSIMKGVEELTDGSKTDFLSFVDGFSSMLDASKGNALTSTVDLHLPSQPTAAAEPFRRTDAFHNPQRISGVNSSKSSEVEVNEADRIGGHS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0194 714 SUPERFAMILY FYVE/PHD zinc finger 54 106 IPR011011 -
Lan6g0194 714 Pfam GYF domain 337 380 IPR003169 GO:0005515
Lan6g0194 714 SMART PHD_3 61 107 IPR001965 -
Lan6g0194 714 MobiDBLite consensus disorder prediction 458 484 - -
Lan6g0194 714 Gene3D - 336 392 IPR035445 -
Lan6g0194 714 CDD GYF 334 387 IPR003169 GO:0005515
Lan6g0194 714 PANTHER UNCHARACTERIZED 19 251 - -
Lan6g0194 714 PANTHER UNCHARACTERIZED 307 708 - -
Lan6g0194 714 ProSiteProfiles Zinc finger PHD-type profile. 59 125 IPR019787 -
Lan6g0194 714 ProSiteProfiles GYF domain profile. 334 388 IPR003169 GO:0005515
Lan6g0194 714 MobiDBLite consensus disorder prediction 30 55 - -
Lan6g0194 714 ProSitePatterns Zinc finger PHD-type signature. 62 122 IPR019786 -
Lan6g0194 714 MobiDBLite consensus disorder prediction 407 430 - -
Lan6g0194 714 MobiDBLite consensus disorder prediction 451 501 - -
Lan6g0194 714 MobiDBLite consensus disorder prediction 539 574 - -
Lan6g0194 714 SMART gyf_5 335 390 IPR003169 GO:0005515
Lan6g0194 714 CDD PHD5_NSD 61 106 - -
Lan6g0194 714 SUPERFAMILY GYF domain 331 387 IPR035445 -
Lan6g0194 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 150 IPR013083 -
Lan6g0194 714 PANTHER BNAC08G48800D PROTEIN 19 251 - -
Lan6g0194 714 PANTHER BNAC08G48800D PROTEIN 307 708 - -
Lan6g0194 714 MobiDBLite consensus disorder prediction 528 574 - -
Lan6g0194 714 MobiDBLite consensus disorder prediction 672 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0194 Lan-Chr6 1414076 1417905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0194 59 132 PHD Transcription Factor Family AT4G14920 36.486 3.63e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0194 - - aip:107642933 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0209 17 1418399 1422157 Lan6g0194 6 1414076 1417905 LSH
Lan18g1063 18 15763316 15767390 Lan6g0194 6 1414076 1417905 LSH