Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0192 ATGCTTTACCAAACTCCCAATCCCTTCTCCACTTTCAATTTCATCCCTTCCTTTCTTTCTTATTCTTCTTCCATCTCTACCCTTCAAACTACATCATCTCTTCCACTCTCTAAGGTTGATACAGAAATGGATTGCATTGAAGGTGCGTTGAAGACCAGTTTAAGGAAAGACTCCACCGTGAAATTGAGCCCACAAACTTTCATGGAGGATTTGAATGTGCAAATTGGCACACCATGTGAAGATTTTTTATTTGTGGATAACCTCCTTGACTTCTCGCATGTGGAACAACAACAAGACGAAGAAGAACCTAAACAACAACAACACAAGGAAGGTGAAGGTGAAGATGAAGATGAAGGCTCTGCTTGTGTCTCCCCTCACAAAAGCTACGAAATTTGTAACCTTTCTCTCAAAGACGAATTTCTTTCCTTACCCACTAGCGACCTCAGTGTTCCGGAAGATGTTGCAGACTTGGAGTGGTTATCTCATTTTGTTGAGGATTCATTCTCTGAATTCCCCACAACCACAACCATGAGAGAGAACCCAAAGACATTTTTTGCTGTGAAAGAACCAAAGCCGTTAAACCCGGTTTATATTCAACCATGTTTCAAAACCCCGGTTCCAGCAAAGGCAAGAAGCAAAAGAACCCGGTCCGGTATTCGGGTTTGGTCACTCGGTTCACGTTGCTTCACTGAGTCATCCTCAAGCTCCACTTCCTCAACCTCTTCCTCTTCTTCCCCAACAAGTACTTTGCTAAATTACGCCGACTTGGTCCAAAACCTCGACCAGGTTTGTTCTCCGCCGAAAAAACCAAAGAAAAGGGTTTCTCTTCACGGTTCCGTTCAGACCCCACGACGGTGCAGCCATTGCGGCGTTCAGAAAACTCCTCAGTGGCGAACTGGGCCACTGGGAGCGAAAACTCTCTGCAACGCTTGTGGGGTCAGGTTCAAATCGGGTCGGCTCTTACCCGAATACAGACCCGCTTGTAGCCCCACGTTTAAAACTGAATTGCACTCCAATCACCACCGCAAAGTGCTCGAGATGCGGCGGAATAAGGAGGACACCGGTGGTGTTGAGACCGGTTTTGCACCTCCTCCGGTGGTCCCCACTTTTTGA 1113 0.4663 MLYQTPNPFSTFNFIPSFLSYSSSISTLQTTSSLPLSKVDTEMDCIEGALKTSLRKDSTVKLSPQTFMEDLNVQIGTPCEDFLFVDNLLDFSHVEQQQDEEEPKQQQHKEGEGEDEDEGSACVSPHKSYEICNLSLKDEFLSLPTSDLSVPEDVADLEWLSHFVEDSFSEFPTTTTMRENPKTFFAVKEPKPLNPVYIQPCFKTPVPAKARSKRTRSGIRVWSLGSRCFTESSSSSTSSTSSSSSPTSTLLNYADLVQNLDQVCSPPKKPKKRVSLHGSVQTPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFKTELHSNHHRKVLEMRRNKEDTGGVETGFAPPPVVPTF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0192 370 ProSitePatterns GATA-type zinc finger domain. 286 311 IPR000679 GO:0006355|GO:0043565
Lan6g0192 370 SMART GATA_3 280 334 IPR000679 GO:0006355|GO:0043565
Lan6g0192 370 PANTHER GATA TRANSCRIPTION FACTOR 43 354 - -
Lan6g0192 370 PANTHER GATA TRANSCRIPTION FACTOR 43 354 - -
Lan6g0192 370 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 280 342 - -
Lan6g0192 370 ProSiteProfiles GATA-type zinc finger domain profile. 280 316 IPR000679 GO:0006355|GO:0043565
Lan6g0192 370 CDD ZnF_GATA 285 333 IPR000679 GO:0006355|GO:0043565
Lan6g0192 370 MobiDBLite consensus disorder prediction 351 370 - -
Lan6g0192 370 MobiDBLite consensus disorder prediction 95 123 - -
Lan6g0192 370 Gene3D - 277 353 IPR013088 GO:0006355|GO:0008270
Lan6g0192 370 Pfam GATA zinc finger 286 320 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0192 Lan-Chr6 1405338 1406755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0192 47 370 C2C2-Gata Transcription Factor Family AT5G66320 48.696 7.00e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan6g0192 GATA 4.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0192 - - gmx:100783966 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0211 17 1442764 1444361 Lan6g0192 6 1405338 1406755 LSH