Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0191 ATGGGTCGAGGGAAGATAGAGATAAAGTTGATAGAGAACCCTACCAACAGGCAAGTAACGTACTCAAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTTAGTGTTCTATGTGATTCTAAGGTTTCTCTTATCATGTTCTCTAAAAACAACAAGATGCATGAATACATTAGCCCTGGCTTCACCACAAAAAAGGTCCTTGATCAGTATCAGAAGACCTTGGGGGATATCGATCTGTGGCATTCCCACTACGAGAAAATGCTGGAAAACTTGAAGAAACTGAAAGATATTAACCATAAACTCAGAAGACAGATCAGGCATAGGATAGGTGAGGGAATGGATGATGATCTGAACTTCCAGCAACTACGCAGTCTTGAAGAGGATATGGTTTCTTCCATTGGAAAAATAAGGGAACGAAAGTTCCATGTGATCAAAACTCGGACTGATACCTGCAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAACGGAAATCTCCTGCTTGAACTTGTAAGTACTTTTCTTTTCAAATTCATATCAAAAGATATAAAACATACATATTTTTTTGATTATGAATCACTAGAAAGTGAAATGTAG 597 0.3802 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDSKVSLIMFSKNNKMHEYISPGFTTKKVLDQYQKTLGDIDLWHSHYEKMLENLKKLKDINHKLRRQIRHRIGEGMDDDLNFQQLRSLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELVSTFLFKFISKDIKHTYFFDYESLESEM* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0191 198 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 170 - -
Lan6g0191 198 Coils Coil 85 105 - -
Lan6g0191 198 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 170 - -
Lan6g0191 198 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan6g0191 198 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan6g0191 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan6g0191 198 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan6g0191 198 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Lan6g0191 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan6g0191 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan6g0191 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan6g0191 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan6g0191 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lan6g0191 198 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lan6g0191 198 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0191 Lan-Chr6 1396054 1420856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0191 1 170 MADS-box Gene Family AT3G54340 54.706 4.82e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan6g0191 K-box 4.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0191 K09264 - gmx:100784496 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0213 17 1458977 1461118 Lan6g0191 6 1396054 1420856 LSH