Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0172 ATGAAAGTAAGGATTTGCTGCAAAATGGGAGGGCAAGATAAGGAAATAGAGATGCCAAACACTTTAGGTTACAAAAGAGATTCTTCTTCCAAGCTGTCTTCTCCAACTTCAGGTGAGAGAAGTGATCATCAACCTTCTCCTGCTCCTCAAATTTCACACCTCTCCCATCATCATCATCTTTATCCTCCTCTTGCACCTACCCAACTTCACCAATCACAGAAACCAAGTGTAGACCCAGATATAAGTTCATCTCCTATTGTCACAACAAGCATAACAATTACCCCAATTACCCCACCACAAATAACTATTAACACGACAGCGTCCATCAGATACCGAGAATGTCTAAGGAACCACGCAGCCAGCATGGGAAACCATGTTGTAGATGGATGTGGAGAATTCATGCCAAGTGGAGAAGGCGCCCCAGAATCTCTTAAGTGTGCTGTTTGTGATTGCCATCGCAATTTCCACAGAAAAGAAGCTGAAGGGGAACCTCTACAACATGCTTCTAATTACTACGCCTATCACCCCAATAAGCACAACAACACTCACAATATAATACCTTCTCCTCCTCCTTATCATAATAATCATCCTCTTCAGTTCCACGCACCATCCCTTTCTAAGCATCAACACCATAGATTTTCTCACGGTGTTGCCACACTTACAAGCCTGATTCCGCCTAGGATGGTCGCCTTTGGAAGTGGTGGAGGCACCGCAGAGTCGTTCAGTGAAGATATCAACATGTTTCAGTCTAATAGCACAGGACAGATATTAGTGCAGCCACCATTCCAGTCAAAGAAGAGGTTCAGGACAAAGTTCACACAGCAACAAAAGGATAGAATGATGGTGTTTGCTGAGAAGCTGGAGTGGAAAATTCAGAAACAAGATGAGCAGGAAGTGCAGCAGTTTTGTTCTCAAGTTGGTCTCAGAAAACAAGTGTTCAAGGTTTGGATGCACAATAACAAGCAAATAATGAAGAAGCGGCAAATGTAA 990 0.4323 MKVRICCKMGGQDKEIEMPNTLGYKRDSSSKLSSPTSGERSDHQPSPAPQISHLSHHHHLYPPLAPTQLHQSQKPSVDPDISSSPIVTTSITITPITPPQITINTTASIRYRECLRNHAASMGNHVVDGCGEFMPSGEGAPESLKCAVCDCHRNFHRKEAEGEPLQHASNYYAYHPNKHNNTHNIIPSPPPYHNNHPLQFHAPSLSKHQHHRFSHGVATLTSLIPPRMVAFGSGGGTAESFSEDINMFQSNSTGQILVQPPFQSKKRFRTKFTQQQKDRMMVFAEKLEWKIQKQDEQEVQQFCSQVGLRKQVFKVWMHNNKQIMKKRQM* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0172 329 MobiDBLite consensus disorder prediction 180 208 - -
Lan6g0172 329 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 48 327 - -
Lan6g0172 329 Gene3D - 259 326 - -
Lan6g0172 329 Pfam ZF-HD protein dimerisation region 109 160 IPR006456 -
Lan6g0172 329 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 110 159 IPR006456 -
Lan6g0172 329 MobiDBLite consensus disorder prediction 1 82 - -
Lan6g0172 329 MobiDBLite consensus disorder prediction 23 51 - -
Lan6g0172 329 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 111 159 IPR006456 -
Lan6g0172 329 MobiDBLite consensus disorder prediction 66 82 - -
Lan6g0172 329 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 265 322 IPR006455 -
Lan6g0172 329 SUPERFAMILY Homeodomain-like 260 326 IPR009057 -
Lan6g0172 329 ProSiteProfiles 'Homeobox' domain profile. 263 327 IPR001356 GO:0003677
Lan6g0172 329 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0172 Lan-Chr6 1261008 1262850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0172 58 329 ZF-HD Transcription Factor Family AT2G18350 39.789 1.27e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan6g0172 ZF-HD_dimer 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0172 - - lang:109332583 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0240 17 1637070 1639330 Lan6g0172 6 1261008 1262850 LSH
Lan18g1050 18 15663450 15664728 Lan6g0172 6 1261008 1262850 LSH