Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0171 ATGCATCATTCTTGCAGTGACGATCATCAGAGCCACGTAATGGGACACTGCACATGTGGTATGTTCCATAGCCAAACCACTCCATACTCTACGTTATTCTCAATGCCAAACCACAAACCCTATGAATATGATCATCATGAACCTGAAATGTATTCGTACACTACTACTCCCTCTTCATCTAGCGTGGATTGCACCCTTTCACTTGGAACCCCTTCCACACGTTCCGTGGAAGATGAAGAGAAGCGAAGCCGCCATGAACGTCGATCTATTTCGAACTTTTGCTGGAATTTGTTACAACCCAAATACAGCACTAAGTCACAAACCAAGGCTAGCAGCAGAGGCAGCAATAGTAACAATACCAATGACTCTATCCTTCCTCGTCGCTGCGCCAATTGTGACACCACTTCAACACCCCTTTGGAGGAATGGACCTCAAGGCCCAAAGTCACTTTGTAATGCGTGTGGGATCAGATTCAAGAAAGAAGAGAGAAGAGCAAATGCTGCTGCAGCCACGCCCACAGCAGCGTCATGCGGTGTAGTGGATTCGGCGCAGAGGTACAGTCACCATAACAACTCATGGTATTCCCAATCGCAGAGCCAGAAGATGCAGTGCCTCTCGCCTGCAATGGGGAACGAGTTCCGGTTCATGGATGATGCAAATCGAGATTCCGAGAACGGCATTCCGTTCCTCTCTTGGAGATTCAATGTCACAGACACAACAAGCTTCGTTCACGATTTTACAGGATGA 747 0.4766 MHHSCSDDHQSHVMGHCTCGMFHSQTTPYSTLFSMPNHKPYEYDHHEPEMYSYTTTPSSSSVDCTLSLGTPSTRSVEDEEKRSRHERRSISNFCWNLLQPKYSTKSQTKASSRGSNSNNTNDSILPRRCANCDTTSTPLWRNGPQGPKSLCNACGIRFKKEERRANAAAATPTAASCGVVDSAQRYSHHNNSWYSQSQSQKMQCLSPAMGNEFRFMDDANRDSENGIPFLSWRFNVTDTTSFVHDFTG* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0171 248 PANTHER GATA TRANSCRIPTION FACTOR 18 1 245 - -
Lan6g0171 248 SMART GATA_3 123 176 IPR000679 GO:0006355|GO:0043565
Lan6g0171 248 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
Lan6g0171 248 Gene3D - 120 201 IPR013088 GO:0006355|GO:0008270
Lan6g0171 248 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Lan6g0171 248 PANTHER GATA TRANSCRIPTION FACTOR 18 1 245 IPR044272 GO:0003700|GO:0009908
Lan6g0171 248 MobiDBLite consensus disorder prediction 105 127 - -
Lan6g0171 248 CDD ZnF_GATA 128 160 IPR000679 GO:0006355|GO:0043565
Lan6g0171 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 170 - -
Lan6g0171 248 MobiDBLite consensus disorder prediction 54 73 - -
Lan6g0171 248 MobiDBLite consensus disorder prediction 54 84 - -
Lan6g0171 248 ProSiteProfiles GATA-type zinc finger domain profile. 127 159 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0171 Lan-Chr6 1257233 1258904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0171 18 247 C2C2-Gata Transcription Factor Family AT3G50870 42.069 8.07e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan6g0171 GATA 4.5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0171 - - gmx:100790571 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0243 17 1658954 1660714 Lan6g0171 6 1257233 1258904 LSH
Lan18g1047 18 15649591 15651782 Lan6g0171 6 1257233 1258904 LSH