Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0167 ATGGATGCGAAGAACAATGTGAAGAACGAAGAACTCGTTGAGTCACCGACGTCGGTTCTCGAAGACGAGGATGATTGCGGCATGGGCGCTGAGGTTAAGTCCGAAGAAGAGGCGCTTTTAGATATTAAAGATGATGGATCCTTGCTTTTAGCAGCATCAATTGCTGAGGAGGAAGAGAAATTGCTCAAAGCACGAATGAAGGAAGAAGAGGAACAATGTGAGGAAGCACCTGACCTCAATGAGACACAGTTTAACAAATTGGACGAGCTTTTAACACAGACTAAACTGTACTCTGAGTTTCTTCTGGAGAAAATGGACGACATCACACTTAATGCTGGTGAGCAAGAAAATAGAGATGAACAAGAGAGTGAGCCAGCTACAAAAAAGAAGGGCCGTAAAAGAAAAGCAGCTTCACAGTGCAATACTGGGAAGGCCAAAAGGGCAGTTGCTGCCATGCTCACAAGATCTAAAGAAAGTGCAAAGACTGAAGATACGAACATGAGTGTGGAGGACAGAATTGCAAAAGAGCAGAAGGAACTTATGCCTTTACTGTCGGGTGGTAAATTGAAATCTTATCAGTTGAAGGGTGTGAAGTGGCTGATTTCATTGTGGCAAAATGGACTGAATGGGATTCTTGCGGATCAAATGGGTCTTGGGAAGACAATCCAAACGATTGGGTTTCTTGCACATTTGAAAGGGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAATTGGGTGAATGAGATTTCTAGGTTTGCTCCATCACTCCCTGCTGTTATCTACCACGGCGACAAGAAACAGAGAGATGAAATCCGTAGGAAACTTATGCCTAGAACAATTGGTCCACAGTTTCCCATTGTAATCACTTCTTATGAGGTTGCTTTAAGTGATGCTAGAAAATGTTTCATGTCATACAATTGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAACTCAAAATGCAAATTAGTGAAGGCATTAAAATGCTTAAATGTAGAAAATAAACTTCTTCTATCTGGGACTCCTCTTCAGAATAACTTGGCGGAGTTATGGTCATTGTTGAACTTCCTCTTACCTGATATTTTCTCATCTCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAACAATGGAGCTACCGAGGAAGAACTTGAAGAGAAAAGAAGAGCCCAAGTAGTAGCGAAGCTCCATGCCATACTTCGACCCTTTCTTCTCCGCAGGATGAAGACTGATGTTGAGCTGATGTTGCCAGGGAAGAAGGAAATCATTATATATGCAACCATGACTGAACATCAGAAGAAATTGCAGGATCATTTAATAAATAAGACAATGGGGAAGTATTTAGAAGAAAAATCATCATCTGGACGTGCTACCAAATCATTAAAAAATTTGTGTCTTCAACTTAGGAAGGTCTGTAACCATCCTGACCTTTTAGAGTCAGCCTTTGACGATTCTTATGTCTATCCTCCTATAAATGAGATAGTTGACCAATGCGGAAAATTCCAATTGCTTGAGCGGTTGTTGGAACAGTTGTTTGCACAAAAGCACAAAGTTCTCATATTCAGTCAGTGGACTAAAGTGTTAGATTTAATGGACTATTATTTTAGCGAGAAAGGGTTTGAAGTTTGCAGAATTGATGGTAGTGTGAAACTGGATGATAGAAAACGGCAGATTGATAACTTCAGTGATCCAAACAGCAAATGCAGAATCTTTCTTCTTTCTACTAGAGCTGGTGGATTGGGAATTAACCTCACTGCTGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCATAGAATAGGCCAGACAAAGCCTGTTCATGTTTACAGGCTCTCAACTGCTCAATCTATAGAGGTTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGTAAAGGACAGTTTCACCAAGAACGTGCTAAGCCTGTCAGTGTAGATGAATTGGAGGAAGAGGATATTTTGTCATTGCTTGGGGATGAAGAAACAGGCGCAGACAAGATGATACAAACAGGTATTAGGGATGAAGACCTGAATAAGTTGTTGGATCGTAGCGATCTTGTTGTCCACAATCCAAAGGACGATGAAGACTTCAAAGCTCCGGTTAGTTCATTTCCCCTTAAAGGGCCTGGGTGGGAGGTGGTGATACCAACTGCAGCAGGCGGCATGCTTTCTACACTTAACAGTTAA 2277 0.4155 MDAKNNVKNEELVESPTSVLEDEDDCGMGAEVKSEEEALLDIKDDGSLLLAASIAEEEEKLLKARMKEEEEQCEEAPDLNETQFNKLDELLTQTKLYSEFLLEKMDDITLNAGEQENRDEQESEPATKKKGRKRKAASQCNTGKAKRAVAAMLTRSKESAKTEDTNMSVEDRIAKEQKELMPLLSGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAVIYHGDKKQRDEIRRKLMPRTIGPQFPIVITSYEVALSDARKCFMSYNWKYLVVDEGHRLKNSKCKLVKALKCLNVENKLLLSGTPLQNNLAELWSLLNFLLPDIFSSLEEFESWFNLSGKCNNGATEEELEEKRRAQVVAKLHAILRPFLLRRMKTDVELMLPGKKEIIIYATMTEHQKKLQDHLINKTMGKYLEEKSSSGRATKSLKNLCLQLRKVCNHPDLLESAFDDSYVYPPINEIVDQCGKFQLLERLLEQLFAQKHKVLIFSQWTKVLDLMDYYFSEKGFEVCRIDGSVKLDDRKRQIDNFSDPNSKCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEVRMLKRAFSKLKLEHVVIGKGQFHQERAKPVSVDELEEEDILSLLGDEETGADKMIQTGIRDEDLNKLLDRSDLVVHNPKDDEDFKAPVSSFPLKGPGWEVVIPTAAGGMLSTLNS* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0167 758 Coils Coil 52 74 - -
Lan6g0167 758 MobiDBLite consensus disorder prediction 1 25 - -
Lan6g0167 758 CDD SF2_C_SNF 501 635 - -
Lan6g0167 758 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 2 757 - -
Lan6g0167 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 419 IPR027417 -
Lan6g0167 758 Pfam SNF2-related domain 192 489 IPR000330 GO:0005524|GO:0140658
Lan6g0167 758 PANTHER SNF2/RAD54 HELICASE FAMILY 2 757 - -
Lan6g0167 758 Gene3D - 190 420 IPR038718 -
Lan6g0167 758 SMART helicmild6 541 625 IPR001650 -
Lan6g0167 758 MobiDBLite consensus disorder prediction 112 129 - -
Lan6g0167 758 SMART ultradead3 185 380 IPR014001 -
Lan6g0167 758 MobiDBLite consensus disorder prediction 112 142 - -
Lan6g0167 758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 515 679 IPR001650 -
Lan6g0167 758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 369 IPR014001 -
Lan6g0167 758 Pfam Helicase conserved C-terminal domain 513 625 IPR001650 -
Lan6g0167 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 712 IPR027417 -
Lan6g0167 758 Gene3D - 425 725 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0167 Lan-Chr6 1197574 1205166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0167 241 687 RAD5 or RAD16-like Gene Family AT5G05130 24.590 1.27e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan6g0167 SNF2_N 5.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0167 K19001 - gmx:100777687 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0249 17 1718915 1724776 Lan6g0167 6 1197574 1205166 LSH