Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0160 ATGCCGCTTGATTTAGATAATGTTTCCACAGTTTCAGGGGAAGCTAGTGTTTCTTCCTCTGGTAATCAGACAGTACCTTCAAAAACTAAGAAAAAACGAAATCTTCCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCAAAGACCCTTATGGCCACAAACAGATTCGTGTGTGAAATTTGCAACAAAGGATTTCAAAGGGATCAGAATCTTCAGCTTCACAGAAGGGGTCATAATCTGCCATGGAAGCTTAGGCAGAGGTCAAGCAAGGAAGTGCGGAAAAGGGTCTATGTTTGTCCAGAACCAACTTGTGTTCATCATGATCCTTCAAGAGCTCTTGGGGATCTCACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCCAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCTAAGATTTGTGGTACCAGAGAGTACAAGTGTGATTGTGGGACTGTGTTTTCAAGGAGAGATAGCTTCATCACACATAGGGCTTTCTGTGATGCCTTAGCAGAAGAGAGTGCAAGATCTCAGCCTCAGAGTCAAACTACACAGACTCAGAGTGCCATAAAGGCTAATTCTGATTCAGATTCCAAAGCTGTAACCGGAGATGATTCATCACCTATGGAGGTGCCACCACTTCCTCCACCATCACCTCCAGCCCCACCAGCTATTCCTCAGTCAAACAGTGCCGCACTATCTGATTTGAAGGTGCAAAATCCAGAGTTGCCAGAAAATACTCCACAAAGCCTAGAGGAACTACAGGCCAAAAATGCTCTAAATGGGAGCTGTAGCACCAGCACCAACACAACAAGCAATGGAGTTAGTGTATTTGCAAGCTTGTTTGCTTCATCAACCACATCTGAAAACCTGCAATCTCAAACACCTGCATTTACCGACCTAATCAGGGCCATGGGACGCCCAGATCATTCGGTGGACATCCCAGGTCCGTCATTTTCTGATCCCATCTCTCTATGCCTCGGCTCGTCAATGTTTGCAACAGGAGGGCAAGAGCGCCGACAGTATGCCCCGCCACCACAGCCAGCTATGTCTGCCACTGCGTTGCTACAGAAAGCTGCTCAGATGGGTGCAGCTGCAACAAATGCCTCTCTACTTCGTGGATTAGGCATAGTTTCATCTTCTGCTTCAACTGCACCAACTCAGCAAGATAGTTTGCAATGGGGTCAGCGACAAGTTGAACCGGACAGTGCCTCTATTTCCCCAGGACTTGGGCTTCCTTGTGACAGTGGCTCTGGACTGAAGGAATTAATGTTAGGGGCTCCTTCCTTGTTCGGGCCAAAGCAGACCACTCTTGATTTTCTTGGATTGGGGATGGTTGCTGGTGGCACTCCTGGTGGAGGCTTATCGGCGCTGATCACATCAATTGGTGGCAGTCTAGATGTTACTGCAGCGGCAACATCCTTTGGTAATGGAGAGTTCTCAGGCGAAGATATTGGGAGGAACTCATAA 1518 0.4723 MPLDLDNVSTVSGEASVSSSGNQTVPSKTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTVFSRRDSFITHRAFCDALAEESARSQPQSQTTQTQSAIKANSDSDSKAVTGDDSSPMEVPPLPPPSPPAPPAIPQSNSAALSDLKVQNPELPENTPQSLEELQAKNALNGSCSTSTNTTSNGVSVFASLFASSTTSENLQSQTPAFTDLIRAMGRPDHSVDIPGPSFSDPISLCLGSSMFATGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTAPTQQDSLQWGQRQVEPDSASISPGLGLPCDSGSGLKELMLGAPSLFGPKQTTLDFLGLGMVAGGTPGGGLSALITSIGGSLDVTAAATSFGNGEFSGEDIGRNS* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0160 505 MobiDBLite consensus disorder prediction 404 419 - -
Lan6g0160 505 MobiDBLite consensus disorder prediction 190 219 - -
Lan6g0160 505 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
Lan6g0160 505 MobiDBLite consensus disorder prediction 404 426 - -
Lan6g0160 505 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
Lan6g0160 505 MobiDBLite consensus disorder prediction 189 244 - -
Lan6g0160 505 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 505 - -
Lan6g0160 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 505 - -
Lan6g0160 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Lan6g0160 505 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Lan6g0160 505 MobiDBLite consensus disorder prediction 1 41 - -
Lan6g0160 505 Gene3D Classic Zinc Finger 113 193 - -
Lan6g0160 505 Gene3D Classic Zinc Finger 39 105 - -
Lan6g0160 505 SMART c2h2final6 135 155 IPR013087 -
Lan6g0160 505 SMART c2h2final6 100 130 IPR013087 -
Lan6g0160 505 SMART c2h2final6 59 81 IPR013087 -
Lan6g0160 505 MobiDBLite consensus disorder prediction 225 242 - -
Lan6g0160 505 MobiDBLite consensus disorder prediction 9 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0160 Lan-Chr6 1156002 1159439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0160 1 505 IDZ Gene Family AT5G66730 58.902 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan6g0160 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0160 K25869 - gmx:100806404 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1271 17 20985443 20988270 Lan6g0160 6 1156002 1159439 LSH
Lan6g0160 6 1156002 1159439 Lan17g1271 17 20985443 20988270 PCT
Lan17g1271 17 20985443 20988270 Lan6g0160 6 1156002 1159439 PCT