Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan6g0150 | ATGGCGAGTAATGGTTTTGGTAAATCAACGACGTCGTTTTCTCCACCAAGCCCATCTTGCTCTGGTAATAATAACAATGACGCTGGTGATTTTGAATGCAACATATGTTTCGATTTAGCTCAAGATCCAGTTATCACTCTATGCGGTCACTTATTTTGTTGGCCATGCCTATACCGTTGGCTCCATCATCATTCACATTCTCAAGAGTGTCCGGTTTGCAAGGCTCTCGTTCAAGAAGAGAAGTTGGTTCCTCTTTATGGGAGGGGAAAGAATCAGTCTGATCCCAGAACTAAATCTTATCCCGGGATGGAGATTCCTCATCGTCCTTCGGGGCAGAGGCCTCAAACCGCACCGCCCCCTCCTCCTAATGCGGCTGGTGCCAACCCTTTTGGGAATATTGGTTTTGGATTGATGGGAGGGTTTATTCCCATGGCCACTGCCAGTTTTGGGAATTTTACCCTTTCAACTGCTTTTGGTGGTTTGATACCGTCTCTGTTCAACATTCAGTTCCATGGGTTTCAAGGTGCCAATGTGTATGGGTCGACTGCGGGTTACCCCTTTGGGTCTAACACGTTTCATGGAGGGGGGAATTCACATGATTTTTCGCAGGGAACTGGTCAGGTGCAGAGGCAGGAGGACAATGTTTTGAAGAATCTGCTTTTGTTGATTGGTTTCCTTGTCCTTCTTACTGTCATTTTTCTGTGTTAA | 708 | 0.4619 | MASNGFGKSTTSFSPPSPSCSGNNNNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKNQSDPRTKSYPGMEIPHRPSGQRPQTAPPPPPNAAGANPFGNIGFGLMGGFIPMATASFGNFTLSTAFGGLIPSLFNIQFHGFQGANVYGSTAGYPFGSNTFHGGGNSHDFSQGTGQVQRQEDNVLKNLLLLIGFLVLLTVIFLC* | 236 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan6g0150 | 235 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 4 | 233 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Lan6g0150 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 33 | 74 | IPR001841 | - | |
Lan6g0150 | 235 | ProSitePatterns | Zinc finger RING-type signature. | 48 | 57 | IPR017907 | - | |
Lan6g0150 | 235 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Lan6g0150 | 235 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 4 | 233 | - | - | |
Lan6g0150 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 95 | IPR013083 | - | |
Lan6g0150 | 235 | MobiDBLite | consensus disorder prediction | 86 | 125 | - | - | |
Lan6g0150 | 235 | SUPERFAMILY | RING/U-box | 29 | 86 | - | - | |
Lan6g0150 | 235 | CDD | RING-HC_AtRMA_like | 31 | 75 | - | - | |
Lan6g0150 | 235 | SMART | ring_2 | 33 | 73 | IPR001841 | - | |
Lan6g0150 | 235 | Pfam | Zinc finger, C3HC4 type (RING finger) | 32 | 73 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan6g0150 | Lan-Chr6 | 1096171 | 1097520 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan6g0150 | 23 | 233 | C3H Transcription Factor Family | AT2G23780 | 61.751 | 1.81e-87 | 256 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan18g1029 | 18 | 15318470 | 15319827 | Lan6g0150 | 6 | 1096171 | 1097520 | LSH |