Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0149 ATGTCCCAAGATTACCAACAAGGAATCTTTACCTTCTTGAACGGGTTCGAAAGAACCACAGTAACTCATCAAGATCAGCACCAGGAGCAACAGATCCAGAGGGACAAGGTGAGGTTGCAAGAAGGCTTCGAGCCTGCACCACCACCGCAACAATTAGATGGGATAGAACAACAACCGGGAGGGCTCCCGGTTTATGAAACGGCGGGGATGCTGTCTGAGATGTTTAATTTCTCTCATGACGGCGCCACCGCCGCTGAATTGTTGGAACAACAGCAGCAGCAGATGACGGTGACCTTTCGGTCCTCGAGGCCTGAACCAGTAGCCAGTGGAAGCGAATGGTACGGAAGCAATAGACAAGGGATAATAACTGGTTTGGGACCGTTGCAAGATTCATCAAAGAATCATCATCATTCTCAGATTTCAAGCATTAATGTAGCAGACTCAGCTGCTCATCAAGCCATGCAACTTTTTCTTATGAACCCTCAAACAAGATCTCCTTCCCCTCCTCCTCTTCCTCCTACAAATTCATCATCTTCCACTCTCCACATGTTGCTTCCAAACACTTCTTCAAATCCCCTACAAGGTTACGCTACCGGTTCAACAGCTGGAGGGTCTTTTGGCCAATTCACATGGGTTCCTGATCACAACACTGAAGATGGAAGCAACACCGGTGGGGTTGTGGAAGGTCAGGGTCTTTCGTTATCATTATCCTCTTCATTGCAGCACCTGGAAGCTGCAAAAGCTGAACAGTTGAGGATGGGGGAAAGTGGTTTTCTATATTACAATCAAGGACCTGGTGGTGCTTCTTCTTCATCTCAGTATCCTTACAAGAACCATGGTAGTAGTCACCCTCATCATTTGCAAGCATTGCATTTACAAGGTTCTATGGTACACCAAGGGCATCAAGTTGGTTTTGGAACAACATCATCATCCTTAAATGCAGTAAATGTTCTTAGAAACTCAAAGTATGTTAAAGCTGCACAAGAATTGCTTGAGGAGTTTTGCAGTGTCGGGAGGGGTCAATTCAAGAAGAACAAGATCAGTAGACAGAACTCAAACCCTAATAATTCAGACACCGTTGGTGGCGGTGGAGGTTCATCAAAGGATCCTCCTCCTCCTATTACTAGTTTGTCAGCGGCAGATAGGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTATCAATGCTTGATGAGGTGGACCGAAGATACAACCACTACTGTGAACAAATGCAAATGGTAGTGAACTCATTTGATGTAGTGATGGGTTTTGGGTCAGCAGTTCCATACACCGCATTGGCACAGAAAGCAATGTCAAGGCATTTCCGGTGTCTGAAGGATGCGATAACAGCAGAGTTGAAGAACAGTTGTGAGGTGCTTGGAGAGAAAGATGGAGGTGGTTGTTCAGGTTTGACAAAAGGAGAGACACCAAGGCTTAAAATGCTTGAGCAAAGCCTAAGACAACAAAGAGCATTCCATCAAATGGGGATGATGGAACAAGAAGCTTGGAGACCACAGAGAGGGTTGCCTGAAAGATCTGTCAACATTTTGAGAGCTTGGCTTTTCGAGCATTTTCTCCATCCGTATCCAAGCGATGCAGATAAGCAACTGTTGGCACGACAAACTGGGCTATCGAGAAATCAGGTATCAAATTGGTTCATTAATGCGAGGGTTCGATTGTGGAAACCTATGGTTGAAGACATGTACCAACAAGAACTTAAAGAAAGAGAAGGTGATTCAGAAGAGAGAGAAGATATGAACCAAAGCAACAACAACAGCAACAGTGGCCAACTAGCACAAACTCCAAACGCAGCAGCTACAACATCAACAGCAACAACAGCGCCACCACCACAACCAATAACTGGCAAAAGATCCGATATCAATGCTCATGAGAGCGACCCTTCACTTGTTGCAATCAATAGAGAAGCCTTTTCGGAAAACCAAGCCTCCACCACCATTATCAACGCCTCTCCCTCTGAGGTGGCGCCACCAGTGTCTCAGTCCTTCGATTCAGACCTGACCCACCATAGATCAATGGCAACTGATGACACGTGTCGCCATGGCAGCACCGTGACAGGGGCTGATTATGGGGCCTCGTTCTCTGTAGGCGGTGCTGACATTGGATCCACACTTATTAGATTTGGGACCACCGCCGGTGACGTGTCACTAACCTTAGGGCTACGCCACGCCGGGAACATGCCAGAGAAAACACCTCCTTACTCTGTTAGAGACTATGGAGCCATTTAA 2244 0.4648 MSQDYQQGIFTFLNGFERTTVTHQDQHQEQQIQRDKVRLQEGFEPAPPPQQLDGIEQQPGGLPVYETAGMLSEMFNFSHDGATAAELLEQQQQQMTVTFRSSRPEPVASGSEWYGSNRQGIITGLGPLQDSSKNHHHSQISSINVADSAAHQAMQLFLMNPQTRSPSPPPLPPTNSSSSTLHMLLPNTSSNPLQGYATGSTAGGSFGQFTWVPDHNTEDGSNTGGVVEGQGLSLSLSSSLQHLEAAKAEQLRMGESGFLYYNQGPGGASSSSQYPYKNHGSSHPHHLQALHLQGSMVHQGHQVGFGTTSSSLNAVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKISRQNSNPNNSDTVGGGGGSSKDPPPPITSLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDVVMGFGSAVPYTALAQKAMSRHFRCLKDAITAELKNSCEVLGEKDGGGCSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKQLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEREGDSEEREDMNQSNNNSNSGQLAQTPNAAATTSTATTAPPPQPITGKRSDINAHESDPSLVAINREAFSENQASTTIINASPSEVAPPVSQSFDSDLTHHRSMATDDTCRHGSTVTGADYGASFSVGGADIGSTLIRFGTTAGDVSLTLGLRHAGNMPEKTPPYSVRDYGAI* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0149 747 CDD homeodomain 502 563 IPR001356 GO:0003677
Lan6g0149 747 Pfam Homeobox KN domain 519 558 IPR008422 GO:0003677|GO:0006355
Lan6g0149 747 SUPERFAMILY Homeodomain-like 504 569 IPR009057 -
Lan6g0149 747 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 55 735 - -
Lan6g0149 747 MobiDBLite consensus disorder prediction 586 618 - -
Lan6g0149 747 MobiDBLite consensus disorder prediction 160 189 - -
Lan6g0149 747 MobiDBLite consensus disorder prediction 345 363 - -
Lan6g0149 747 Gene3D - 505 567 - -
Lan6g0149 747 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 55 735 - -
Lan6g0149 747 MobiDBLite consensus disorder prediction 572 627 - -
Lan6g0149 747 ProSiteProfiles 'Homeobox' domain profile. 499 562 IPR001356 GO:0003677
Lan6g0149 747 Pfam Associated with HOX 317 449 IPR006563 -
Lan6g0149 747 SMART prehox3 312 450 IPR006563 -
Lan6g0149 747 MobiDBLite consensus disorder prediction 345 381 - -
Lan6g0149 747 SMART HOX_1 502 566 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0149 Lan-Chr6 1075706 1083544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0149 1 95 Homeobox Transcription Factor Family AT2G23760 37.000 1.11e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan6g0149 POX 1.7e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0149 - - lang:109332370 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0273 17 1887131 1896115 Lan6g0149 6 1075706 1083544 LSH
Lan18g1027 18 15296892 15304400 Lan6g0149 6 1075706 1083544 LSH