Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0123 ATGTCTCATCGAGTGGTGACGGCACCGTTTTTGACAAAGACTTATGAATTGGTGGATGATCCAATGACAGATGAAGTGATATCTTGGAGTGAAAGTGGAAACACGTTTGTGGTGTGGAAGCATGCAGAATTTGCAAAAGATTTACTTCCCAAATATTTCAAACATAACAACTTCTCCAGCTTTGTTCGTCAGCTCAATACATATCAATTCCGAAAAATTGTTCCAGACAAATGGGAATTCGCGAACGAACACTTTAATCGAGGCCAGAAGCAGCTTCTCTCCCATATCAAACGTCGCAAGACGAATCTGCCCCCATCATCGGCTCAGCCTCCAGTGATCAGAAAATCTGACGCCAATGATAACTCTCCGTCAAACTCCGGCGCCGACGAGATAGGTTCCATTTCCACCTCCTCCCCCGATTCTAAGAACTCGGGATCAATGGAGGTGACAGATTTATCAAGTGAGAATCAAAAGCTGAAAAAAGATAATGAAAAACTGAGCTTTAATCTGGCACGTGCGAAGAAGCAATGCGATGAGTTGGTTGTTTTTCTAAGGGATTGTTTGATGGTGGGTCCCGATCAAATTAATCGCGTATTGGGAGAAGGGTGTTGTGGCTCCACCAATGAAACGGTGCGTTCTGATGCAGATGAAAATGTGGTAGTTGAAGGTGGTGGTGGTGGTGATGGAGATAGTTTGAAACTATTTGGTGTTTGGTTGAAATATGACAAAAATAATAACAACTATAAGAAGCGAAAGCGTCAAGACCAATTGGACCTTAGTGGGCCTAGCGCAAAGGAATTTAAATCTGTTGTTAACTTTAATGGTGCTACTACTATACTTATGATAAAGAGCAGCAAGGTCTAA 864 0.4236 MSHRVVTAPFLTKTYELVDDPMTDEVISWSESGNTFVVWKHAEFAKDLLPKYFKHNNFSSFVRQLNTYQFRKIVPDKWEFANEHFNRGQKQLLSHIKRRKTNLPPSSAQPPVIRKSDANDNSPSNSGADEIGSISTSSPDSKNSGSMEVTDLSSENQKLKKDNEKLSFNLARAKKQCDELVVFLRDCLMVGPDQINRVLGEGCCGSTNETVRSDADENVVVEGGGGGDGDSLKLFGVWLKYDKNNNNYKKRKRQDQLDLSGPSAKEFKSVVNFNGATTILMIKSSKV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0123 287 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 275 IPR027725 -
Lan6g0123 287 Coils Coil 149 176 - -
Lan6g0123 287 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g0123 287 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g0123 287 SUPERFAMILY "Winged helix" DNA-binding domain 8 99 IPR036390 -
Lan6g0123 287 MobiDBLite consensus disorder prediction 100 158 - -
Lan6g0123 287 MobiDBLite consensus disorder prediction 100 153 - -
Lan6g0123 287 Gene3D - 2 101 IPR036388 -
Lan6g0123 287 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g0123 287 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 275 - -
Lan6g0123 287 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g0123 287 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g0123 287 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0123 Lan-Chr6 860568 863840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0123 2 287 HSF AT4G36990 49.135 6.65e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan6g0123 HSF_DNA-bind 3.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0123 K09419 - gmx:100791543 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0144 17 880318 882052 Lan6g0123 6 860568 863840 LSH