Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0116 ATGTGGGATCTGAATGATTCCCCTGATCAGAGTTATGATAACAAAGACAAAAGCGTTGGATCTGTTTCCAATTCAAGCTCCTCCACGGTGGTAATCGAAGATGACAATGGATCAGAAGAAGAATTGAAGAAAAGAAGCAGCAAGATATTTGGGTTCTTTGTGACCCATCAACATGATGATGCTGAGTCCATGAATAGTAACAACTTACCGGTGACTCAACAGCTTTTACCGGTGGAGGAGGAGTCTGAGATGGCAGCACCCTCCGGTGGTGTTAGAAGTTCTTCGAACTTCCCTCGAGGTTACTGTGTAGGAGTGAAATTTTGTCAATCAGTGGAAATGTCTCAGCCTATGAAGAAGAGTAGAAGAGGACCAAGGTCTAGGAGTTCACAGCATAGGGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCACATATTTGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCGATTAAATTCCGGGGAGTAGATGCAGACATAAACTTCAATGTAAAAGATTATGAAGAAGATTTGAAGCAGCTGAGCAATCTAACGAAGGAGGAGTTTGTGCACGTACTTCGCCGACAAAGCAGTGGATTTCCGAGAGGAAGCTCAAAATATAGAGGTGTAACTCTGCACAAATGTGGAAGATGGGAAGCAAGAATGGGCCAATTTTTAGGCAAAAAGTACGTTTATCTGGGTCTTTTTGACACTGAGGTTGAGGCTGCAAGGGCTTATGATAAAGCAGCAATAAAGTGCAATGGCAAAGAAGCCCTCACTAATTTTCACCACACCATCTATGATCACGAACTTAACCCTGAATCTTCAGGGAATGCCGCAGATCACAATTTGGATTTAAGTTTAGGAAATTCGAGCTCTAAGCACAGCAATAATAAAACATTGGGGTGTGAAAATGCTGCAATTAATCATACTCCAAAGCTCGTGAACATACTACCAAAGGTATGTAGTAATAGCCACATGGATGGGTATGGTCCTTTGACTCCTTTCAAGTCTTCTGGAGAGCCTCACAATTTTGCACATCATCTTCACCCACCAAATTTTTATTTACTCAGCAGCAGCAATGGAGGCCAAATTGGAAGTGATCTTTCATTATCACTGACCAATCAACAACAATGGCAAATGAGTCCTCCACCTTTTTTAGCAACTGCTGCAGCATCATCAGGATTCTCATCTCAGATAAGAATGATAAGACCCTCCCATGGTTGGGTACAGAAAAATGGTTTCCACAATCTCATGAGACCCCCTTAA 1317 0.4267 MWDLNDSPDQSYDNKDKSVGSVSNSSSSTVVIEDDNGSEEELKKRSSKIFGFFVTHQHDDAESMNSNNLPVTQQLLPVEEESEMAAPSGGVRSSSNFPRGYCVGVKFCQSVEMSQPMKKSRRGPRSRSSQHRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVKDYEEDLKQLSNLTKEEFVHVLRRQSSGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEALTNFHHTIYDHELNPESSGNAADHNLDLSLGNSSSKHSNNKTLGCENAAINHTPKLVNILPKVCSNSHMDGYGPLTPFKSSGEPHNFAHHLHPPNFYLLSSSNGGQIGSDLSLSLTNQQQWQMSPPPFLATAAASSGFSSQIRMIRPSHGWVQKNGFHNLMRPP* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0116 438 CDD AP2 221 278 IPR001471 GO:0003700|GO:0006355
Lan6g0116 438 ProSiteProfiles AP2/ERF domain profile. 130 186 IPR001471 GO:0003700|GO:0006355
Lan6g0116 438 MobiDBLite consensus disorder prediction 1 42 - -
Lan6g0116 438 SUPERFAMILY DNA-binding domain 221 280 IPR016177 GO:0003677
Lan6g0116 438 Gene3D AP2/ERF domain 221 280 IPR036955 GO:0003700|GO:0006355
Lan6g0116 438 Gene3D AP2/ERF domain 129 188 IPR036955 GO:0003700|GO:0006355
Lan6g0116 438 Pfam AP2 domain 130 178 IPR001471 GO:0003700|GO:0006355
Lan6g0116 438 Pfam AP2 domain 221 270 IPR001471 GO:0003700|GO:0006355
Lan6g0116 438 SMART rav1_2 222 285 IPR001471 GO:0003700|GO:0006355
Lan6g0116 438 SMART rav1_2 130 192 IPR001471 GO:0003700|GO:0006355
Lan6g0116 438 ProSiteProfiles AP2/ERF domain profile. 222 279 IPR001471 GO:0003700|GO:0006355
Lan6g0116 438 SUPERFAMILY DNA-binding domain 129 187 IPR016177 GO:0003677
Lan6g0116 438 PRINTS Ethylene responsive element binding protein signature 223 234 IPR001471 GO:0003700|GO:0006355
Lan6g0116 438 PRINTS Ethylene responsive element binding protein signature 261 281 IPR001471 GO:0003700|GO:0006355
Lan6g0116 438 MobiDBLite consensus disorder prediction 14 33 - -
Lan6g0116 438 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 339 436 - -
Lan6g0116 438 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 10 323 - -
Lan6g0116 438 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 339 436 - -
Lan6g0116 438 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0116 Lan-Chr6 802488 805843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0116 1 437 AP2-EREBP Transcription Factor Family AT4G36920 53.846 1.55e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan6g0116 AP2 7.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0116 K09284 - gmx:100786333 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0317 17 2326430 2330092 Lan6g0116 6 802488 805843 LSH