Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0114 ATGAACGGCGAAGGTGGCGGTGGAGGAACAAGAGATATGGGTACGAGGAAGAGAGGGAAAGAGAGTGGAGAGAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGTAAGTGGGTCGCTGAGATCAGAGAACCTAACAAGCGTTCAAGGATTTGGCTCGGTTCTTATTCCACACCCGTTGCGGCGGCGCGTGCTTACGACACCGCCGTGTTCTATCTTCGTGGACCATCAGCTCGCCTCAACTTCCCCGAGCTTTTAACGGACGATAACGGCGCCGTTATTGCCAACTGTGATATGTCGGCGGCGTTTATTAGAAAGAAAGCAACGGAGGTCGGTGCCAGAGTCGATGCCCTCCAAGCCAGCCACCACCGTCACCATGTAGCGGTGGCGCCGGAGCTTGTTTTGTCTGATGGTGGCGATGAAAACCGCTCTTGTCACTTTTCGGAGCGGGTTGACCTGAACAAAATACCCGAACCTGAGAATTCGGACTGCGACTATGATATGAATTAG 510 0.5275 MNGEGGGGGTRDMGTRKRGKESGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLTDDNGAVIANCDMSAAFIRKKATEVGARVDALQASHHRHHVAVAPELVLSDGGDENRSCHFSERVDLNKIPEPENSDCDYDMN* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0114 169 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Lan6g0114 169 MobiDBLite consensus disorder prediction 1 25 - -
Lan6g0114 169 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Lan6g0114 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 10 163 - -
Lan6g0114 169 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Lan6g0114 169 MobiDBLite consensus disorder prediction 11 25 - -
Lan6g0114 169 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Lan6g0114 169 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Lan6g0114 169 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Lan6g0114 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 163 - -
Lan6g0114 169 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Lan6g0114 169 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0114 Lan-Chr6 788926 789915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0114 13 167 AP2-EREBP Transcription Factor Family AT2G23340 60.465 1.21e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan6g0114 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0114 K09286 - gmx:100527066 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0319 17 2340267 2341020 Lan6g0114 6 788926 789915 LSH
Lan18g1000 18 15047343 15048245 Lan6g0114 6 788926 789915 LSH