Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0102 ATGGATGTCAGAGAAGCTATGGCATTCTCAGGTAATTCTGGTTCATATTCCGCACATAGAGAAGGAGGGGTTGGTGGTTCTGGTTCTGGAACACAGACCAGAGGGTTCCAACCAGTTTCTGGTTTCAGAAGTTTGTTGAATGTGAGAGATGGTTCTTCTGGTTCTGCATTTTCAGTAGAGCATTCTGAGCATGACAATTTTGGTCATGGCATTAGTATTGTTACCCTTCCTGGAATGGTACCTTCTTCCTCAGGGGAGAGTGTTAAGAAGAAAAGAGGGAGGCCAAGAAAATATGGTCCTTCTGATGGTCCAGTTTCTTTGAGACTCTCTCCCATGTCTGCCACTGCTAATTCAACCCCTGGTTCAACAACCACACCTTCCGAGAAACGGCCTCGAGGGCGCCCCCGAGGAAGTGGAAGGAAGCAACAGTTAGCTTCTCTTGGAGAATGGATGAACAATTCTGCAGGACAAGCTTTTTCGCCTCATGTTATCACCATTGGAGTTGGGGAGGACATCGTAGCAAAGTTATTGTTATTTGCACAGCAGAGACCAAGGGCTCTATGCATCTTATCAGGCACTGGGACAATTTCTTCAGTCACTATGCATCAGCCTGCTTCTACTGCTGGCAGTGTTACTTATGAGGGGAAATTTCAAATATTATGCTTGTCTGGATCTTACTTGGTTGCTGAAGATGGTGGACCTCGAAATAGAACAGGTGGCATGAGTGCTTCTCTTTCTAGTCCTGATGGTCATATTATTGGCGGCGGTATTGCTAGTCTTATTGCTGCAAGCCCAGTGCAGGTGGTAGTGTGCAGTTTTATATATGGCAGCTCAAAGCCAAAAACAAAGGAAGCGGCGATTGTAAGTTCAGAGCCTCAGAGTAGTGATAAGTTAGGTTCTTCTCCGGCAGTGAATGCTCCAGTTACTCAAAACTACAGTGCTTCAGCAACGGGCAAGTGGCCAGCAGATACAGATGCAGATGTGAAAAGGGAACAACCACAGCCGCAGCCACAGCCACACACTGGCATCGACTTGACTCGTGGGTGA 1047 0.469 MDVREAMAFSGNSGSYSAHREGGVGGSGSGTQTRGFQPVSGFRSLLNVRDGSSGSAFSVEHSEHDNFGHGISIVTLPGMVPSSSGESVKKKRGRPRKYGPSDGPVSLRLSPMSATANSTPGSTTTPSEKRPRGRPRGSGRKQQLASLGEWMNNSAGQAFSPHVITIGVGEDIVAKLLLFAQQRPRALCILSGTGTISSVTMHQPASTAGSVTYEGKFQILCLSGSYLVAEDGGPRNRTGGMSASLSSPDGHIIGGGIASLIAASPVQVVVCSFIYGSSKPKTKEAAIVSSEPQSSDKLGSSPAVNAPVTQNYSASATGKWPADTDADVKREQPQPQPQPHTGIDLTRG* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0102 348 Gene3D - 161 289 - -
Lan6g0102 348 MobiDBLite consensus disorder prediction 334 348 - -
Lan6g0102 348 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 348 - -
Lan6g0102 348 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 273 IPR005175 -
Lan6g0102 348 ProSiteProfiles PPC domain profile profile. 156 294 IPR005175 -
Lan6g0102 348 MobiDBLite consensus disorder prediction 286 348 - -
Lan6g0102 348 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 275 - -
Lan6g0102 348 MobiDBLite consensus disorder prediction 1 31 - -
Lan6g0102 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 348 IPR039605 GO:0003680
Lan6g0102 348 CDD DUF296 161 273 IPR005175 -
Lan6g0102 348 MobiDBLite consensus disorder prediction 108 128 - -
Lan6g0102 348 MobiDBLite consensus disorder prediction 286 318 - -
Lan6g0102 348 MobiDBLite consensus disorder prediction 76 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0102 Lan-Chr6 679154 684185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0102 1 348 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 45.501 3.63e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0102 - - gmx:100790569 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1109 18 16116217 16118990 Lan6g0102 6 679154 684185 LSH
Lan6g0102 6 679154 684185 Lan18g0218 18 2180969 2185880 PCT