Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0096 ATGGCTAGGCAAGTGTGTGAAGGGAAATTAAGGGACATGGTGTCTTCATCTTCAGCTGGATATTCATACACTGATCATGTGACACCAACCCATCATTTAGCGAACCAGATCCAAGGCTTTGTGTCTGACTCGGACATATTCAACCTCACCACAAACATGGAGATGATAGGGTTTCACAAGAATCAGCTTCATCAGCAACAGCAACAGCAGTGTGACAGCACCAACATGTGGGAAACTAACAATTTCTTCTCCAAACTTGGTCCATCTACTTCTACCAACACCATGAATGAGTCTTCTACCGCTTTCTATGAATACAGCAGCAACAACAATAACAATAATAAACCAGATTTCATATCAGGGATTTCTGAAACAACAAGCAATGATAATCTAATTATTGGAACAACTACTCATGAAGACTCAGCTCCATGGCAAGACAATACTCACAATAGGTTATTGGTTGATGATTCTTCTTTTAGGTGTGTATTCCCTTGTGAAGGAAATGAAAGGCCAAGTCAAGGACTCTCACTCTCTCTTAGTTCAACCAACCCTTCAAATATTGGCCTACAATCTTTTGAGCTAAGACAAACAGCTCAACAAAATGTTCAACTGCACCACCAACAACAGATTTTACAAGATGGGTACTTGAGTGCTAAAGCTGCAAGTGTTTATCAAGGACATTATTTTATCAAGAACTCAAAGTACTTGGTACCTGCACAGGAGCTTCTGAACGAGTTTTGTAATTTGGGAACAAAGCAAAGTGACATGGTGATAAAGCATAAGTTCAGCAAGAACAAGCAGCGGGAAGAGGATAACAACATCGATATTGGGTCCTCAAAGAAACCTACTGTTACCTCTTTGGAGTTTGTAGAGTTGCAGAAGAGAAAGACAAAGCTTATTTTGATGCTGGAAGAGGTTGGCAGAAGATACAAGCACTACCGTAATCAAATGAAGGCAGTGGTATCGTCATTTGAAGAAGTGGCAGGGAATGGGGCAGCGACAGTGTACTCAGCTTTGGCTTTGAAAGCCATGTCAAGACATTTCAAGTGTTTGAAGGATGAGATTTTGGGTCAGATAGAAGCCACAGGGAAAAGCATGGGAGAGAAAGATTCAGTAGCAGTAGCACCAGGAGCAACAAGGGGTGAAACACCAAGACTCAAAGTTATAGACCAAACACTAAGACAACAAAGGGCATTTCAGCAAATGACTATGATGGAAACACATCCATGGAGACCCCAACGTGGCCTTCCTCAACGATCTGTTTCACTTTTAAGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGTGATATTGATAAACATATTTTAGCCCGTCAAACTGGTCTCTCTAGAAGCCAGGTATCAAATTGGTTCATCAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACATAGAAGAAGTCAAGGAACATGAAAACGACATGGCTAATTCCTTAGAAGGTGATACTGATCCTGATATTGAAGATAATGTTAATCCCAATAATGTTCAAAACCAATTACATCCTTCATCAATAATAGAGGAACAAAAGCCAACACTTAGAATTGACACAGAGTGTGTCTCTTCTATCATCAATAACCATAACAAAAATGATCCAACAAAGAACATGACTAAATCCCTTTATTACAACCAGCACCATATGAATCCCGGCCAGGACCATCTTAGAATATTTAGCCCTAACTCCGTTGACACTTTTGGGTCGATGGAGCTTGATTTTTCATCCTACAACCATCACCACTCTTCTACCATGGTTCCTTACACAACAAGTAACGATCAAAATGCCAACCTTGGTTTCAGCAATGATGGTGGTCGTAGTGGAGTGTCTTTGACTCTAGGGTTACAGCAACATGGTGAAAGTGGTGTGAGCCTAGCATTCCCTTCAACAACACAACATAATTCATTGTTCTACACAAGAGACCCTAATGAAGATTGTCAAACAGTGGAATACTCTTTTCTTGATGGCGAAGGACAAAATTTGCAATACAGAAATTTGATGGGGGCACAGTTGCTACATGATTTGGCAGGATAG 2061 0.409 MARQVCEGKLRDMVSSSSAGYSYTDHVTPTHHLANQIQGFVSDSDIFNLTTNMEMIGFHKNQLHQQQQQQCDSTNMWETNNFFSKLGPSTSTNTMNESSTAFYEYSSNNNNNNKPDFISGISETTSNDNLIIGTTTHEDSAPWQDNTHNRLLVDDSSFRCVFPCEGNERPSQGLSLSLSSTNPSNIGLQSFELRQTAQQNVQLHHQQQILQDGYLSAKAASVYQGHYFIKNSKYLVPAQELLNEFCNLGTKQSDMVIKHKFSKNKQREEDNNIDIGSSKKPTVTSLEFVELQKRKTKLILMLEEVGRRYKHYRNQMKAVVSSFEEVAGNGAATVYSALALKAMSRHFKCLKDEILGQIEATGKSMGEKDSVAVAPGATRGETPRLKVIDQTLRQQRAFQQMTMMETHPWRPQRGLPQRSVSLLRAWLFEHFLHPYPSDIDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYIEEVKEHENDMANSLEGDTDPDIEDNVNPNNVQNQLHPSSIIEEQKPTLRIDTECVSSIINNHNKNDPTKNMTKSLYYNQHHMNPGQDHLRIFSPNSVDTFGSMELDFSSYNHHHSSTMVPYTTSNDQNANLGFSNDGGRSGVSLTLGLQQHGESGVSLAFPSTTQHNSLFYTRDPNEDCQTVEYSFLDGEGQNLQYRNLMGAQLLHDLAG* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0096 686 Pfam Homeobox KN domain 426 465 IPR008422 GO:0003677|GO:0006355
Lan6g0096 686 Pfam Associated with HOX 229 354 IPR006563 -
Lan6g0096 686 Gene3D - 412 474 - -
Lan6g0096 686 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 1 641 - -
Lan6g0096 686 ProSiteProfiles 'Homeobox' domain profile. 406 469 IPR001356 GO:0003677
Lan6g0096 686 SUPERFAMILY Homeodomain-like 410 475 IPR009057 -
Lan6g0096 686 SMART prehox3 223 356 IPR006563 -
Lan6g0096 686 CDD homeodomain 409 470 IPR001356 GO:0003677
Lan6g0096 686 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 641 - -
Lan6g0096 686 SMART HOX_1 409 473 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0096 Lan-Chr6 635349 639819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0096 149 685 Homeobox Transcription Factor Family AT5G41410 45.210 1.50e-134 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan6g0096 POX 1.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0096 - - lang:109331282 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0123 17 717634 721548 Lan6g0096 6 635349 639819 LSH
Lan6g0096 6 635349 639819 Lan18g0194 18 1816770 1821969 PCT
Lan1g1956 1 34823070 34825558 Lan6g0096 6 635349 639819 PCT