Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0093 ATGGCGATTTCTTCTCTCTCTGCTTCTTCTACTCTTCTTCCTCCATTTTCTCTCTCTAACTCTTCCACTTCAAACTTCGCTTCTTTCTTCTTTCTATCTCGTAGTAATGGTAACAACGCTTTCAAATCTCTTCACTCATCATCAACTAGGCTCTATGCAGCTCCTGAAGTTTTGAATTCCTCAGAATCGGTTAACCCACCTTCACAAACCCTTGATGGTGAATCTGACACCACCACCGTTCAGGTCGGAGACTCAGAGACTCGGAGTGCTTCATCCGTTAGCATCGCTGCAGATGCAGATACGATGGCACCAAAGCAGAAAATTAGAATCAAGCTTAGATCTTACTGGGTGCCACTTATAGAGGATTCGTGCAAGCAGATACTAGACGCAGCAAGGACTACCAATGCAAAAACCATGGGTCCTGTACCATTGCCTACCAAGAAGCGAATTTACTGTGTTCTTAAATCCCCCCATGTGCATAAGGATGCACGGTTCCATTTCGAGATCAGAACCCATCAGCGTATCATTGATATTCTATATCCTACTGCCCAAACAATAGATTCTCTGATGCAGCTCGATATTCCTGCTGGTGTTGATGTGGAGGTCAAGCTCTAA 615 0.4439 MAISSLSASSTLLPPFSLSNSSTSNFASFFFLSRSNGNNAFKSLHSSSTRLYAAPEVLNSSESVNPPSQTLDGESDTTTVQVGDSETRSASSVSIAADADTMAPKQKIRIKLRSYWVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRIIDILYPTAQTIDSLMQLDIPAGVDVEVKL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0093 204 Pfam Ribosomal protein S10p/S20e 109 203 IPR027486 -
Lan6g0093 204 ProSitePatterns Ribosomal protein S10 signature. 131 146 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lan6g0093 204 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 204 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lan6g0093 204 SUPERFAMILY Ribosomal protein S10 107 204 IPR036838 -
Lan6g0093 204 PANTHER BNAC05G40270D PROTEIN 1 204 - -
Lan6g0093 204 Hamap 30S ribosomal protein S10 [rpsJ]. 105 204 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lan6g0093 204 PRINTS Ribosomal protein S10 family signature 107 120 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lan6g0093 204 PRINTS Ribosomal protein S10 family signature 142 157 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lan6g0093 204 PRINTS Ribosomal protein S10 family signature 163 177 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lan6g0093 204 TIGRFAM rpsJ_bact: ribosomal protein uS10 106 203 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lan6g0093 204 MobiDBLite consensus disorder prediction 58 93 - -
Lan6g0093 204 SMART Ribosomal_S10_2 109 203 IPR027486 -
Lan6g0093 204 Gene3D Ribosomal protein S10 domain 94 204 IPR036838 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0093 106 202 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 32.653 9.22e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0093 K02946 - qsu:111986192 272.707