Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0092 ATGAAGTTATCAGCTTTTGAAGTTTTGCATTTGGGTTTTCCAATTTTGTTGTTGGTGTACATTATTCAGGTGCATGGTGTTAATGGCCATGCTAAAAACTTCATCACTTGGGATGATCTAATGGTTGATGAGCATAATCTGGCTTCAGATATTGGTGGTCAAGTTATAGTGGTAGATCACGGTGGTAATGGAGATTCAACAACTGTTCAAGGGGCTGTGGACATGGTTCCTGAAGATAACACAGAAAGGGTGAAGATTTATATTTATCCTGGAACTTACAGAGAAAGAGTGCATGTGCCAAAAAACAAGCCATTTATCTCATTTATAGGTAAACCAAATATAAGAGGGAATGGTAATGTGAATGCACTAAATATAAGTGAGATAGGCAATGCCATTCCTACAATCACAAACAGTACAAAGGCATCAGACAAAGGCTCAGATGGCCAAGAAATTGGAACAGTTAGTACAGCAACAGTATGGGTTGAATCTGATTTCTTCTGTGCAACTGCTCTTACTATTCAGAATTTGGTAGACAGAGATGCAGATAAACGTCAAGCAGTGGCATTGCGGGTAGATGGTGATAAAGCTGTATTCTACAAAGTTAAGCTGATAGGGGAACAAGACACTCTCCTAGATAACAATGGAACTCACTATTTCTACAGAAGTTACATTCAAGGATCGGTTGATTTCATATTTGGCCAAGCAAAATCACTTTTTCATGAGTGTATAATATACTCAGTAGCTGAGTTTTGGGGAGCAATTGCAGCTCATCATAGGAACTCAGTAGATGAAGATACAGGATTTTCATTTGTTGGTTGCACAATCAAAGGAAATGGTAGTGTCTTACTTGGTAGAGCTTGGGGGGACTATGCAACAACAATATATTCCAATTGTTACATGGATAATATCATTAGCCCAATGGGATGGAGTGATTGGAATGTTCCATCCAGACAAAGAACTGCTATGTTTGGAGAATACCAGTGTTCTGGAAAAGGATCAAATAGAACTGAGAGGGTAGAATGGTCAAAAGCTTTAAGCAGTGAAGAAGCTAAGCCTTTCCTTGGAAGAGATTACATATATGGAGACACATGGCTTAAACTACAGTAG 1107 0.3866 MKLSAFEVLHLGFPILLLVYIIQVHGVNGHAKNFITWDDLMVDEHNLASDIGGQVIVVDHGGNGDSTTVQGAVDMVPEDNTERVKIYIYPGTYRERVHVPKNKPFISFIGKPNIRGNGNVNALNISEIGNAIPTITNSTKASDKGSDGQEIGTVSTATVWVESDFFCATALTIQNLVDRDADKRQAVALRVDGDKAVFYKVKLIGEQDTLLDNNGTHYFYRSYIQGSVDFIFGQAKSLFHECIIYSVAEFWGAIAAHHRNSVDEDTGFSFVGCTIKGNGSVLLGRAWGDYATTIYSNCYMDNIISPMGWSDWNVPSRQRTAMFGEYQCSGKGSNRTERVEWSKALSSEEAKPFLGRDYIYGDTWLKLQ* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0092 368 SUPERFAMILY Pectin lyase-like 54 366 IPR011050 -
Lan6g0092 368 Gene3D - 54 368 IPR012334 -
Lan6g0092 368 PANTHER PECTINESTERASE QRT1 17 367 - -
Lan6g0092 368 ProSitePatterns Pectinesterase signature 2. 224 233 IPR033131 -
Lan6g0092 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 17 367 - -
Lan6g0092 368 Pfam Pectinesterase 56 362 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0092 Lan-Chr6 617231 620201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0092 1 319 Carbohydrate Esterase AT5G55590 51.724 6.47e-116 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0092 K01051 - gmx:100812850 585.874