Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0091 ATGGAGGGAAGTGAAATTGAGAAGAAAGCAAGAGAAGCATTCTTCGAAGACGATTTCGAAATGGCCGTTGATCTGTATTCTGAAGCAATCCAATTAAATCCTAACAACGCTGATCTCTTTGCTGATAGAGCCCAATCACACATTAAGCTTAACTGTTTCACTGAAGCTGTTTCTGATGCCAACAAAGCTATCCTCTTCAATCCTTCTTTCTCTAAGGCTTATCTTCGCAAAGGGATTGCTTGTATTAAGCTTGAAGAGTATCATACTGCCAAGTTAGCATTACAAAGTGGTGCTTCTTTTGCACCAAATGATTCAAGGTTCACCAAATTGATTCAGGACTGTGATCGCTATATTGCAGAGGAATCAAATGGTCTTACTAGCACCTTATCATCAATTGATCTTACTAGCACCTTATCGTCAAATGGGCCTGTAATGACAGTACCATCCGGTGATGGTTCCCGTTTGTGTGATACAACTGCTGGAACGGCTAAAGAAGCTGAAAGAGACAGTTTGGTAACCCAAACCAATGTAGTTACATCAATGAGACCAAAATACAGACATGAATACTACCAGAAGCCAGAAGAAGTGGTTCTCACAATATTTGCGAAAGGAATACCAGCAAAAAACGTGGTTGTTGACTTCGGTGAACAGATTCTGAGTGTTACTATTGATGTTCCTGGCCAAGATCCCTACCATTATCAACCTCGATTGTTTGGAAAGATAGTACCTAATAAGTGCAGAGTTGAGGTGTTGTCAACTAAAGTGGAAATCCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAACAAGGATTTGCTTCCCCAAAAAATAAATACTCTCACAGTTCAATCTGAAAGGCCTACATACCCATCATCAAAGCCAAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGGAGAAGGAAGAAAAGCTAGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATATACCAAAGTGCAGATGAGGACACGAGGAGAGCAATGAGCAAGTCTTTTTTGGAGTCAAATGGAACAGTGCTGTCAACTGACTGGAAAGAAGTGGGTACAAAGAAGGTTGAAGGCAGTCCTCCAGAGGGCATGGAGTTGAAGAAATGGGAGTATTGA 1152 0.4071 MEGSEIEKKAREAFFEDDFEMAVDLYSEAIQLNPNNADLFADRAQSHIKLNCFTEAVSDANKAILFNPSFSKAYLRKGIACIKLEEYHTAKLALQSGASFAPNDSRFTKLIQDCDRYIAEESNGLTSTLSSIDLTSTLSSNGPVMTVPSGDGSRLCDTTAGTAKEAERDSLVTQTNVVTSMRPKYRHEYYQKPEEVVLTIFAKGIPAKNVVVDFGEQILSVTIDVPGQDPYHYQPRLFGKIVPNKCRVEVLSTKVEIRLAKAEAINWTSLEYNKDLLPQKINTLTVQSERPTYPSSKPRTRDWDKLEAQVKKEEKEEKLDGDAALNKLFRDIYQSADEDTRRAMSKSFLESNGTVLSTDWKEVGTKKVEGSPPEGMELKKWEY* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0091 383 Pfam CS domain 186 261 IPR007052 -
Lan6g0091 383 ProSiteProfiles TPR repeat profile. 3 36 IPR019734 GO:0005515
Lan6g0091 383 SUPERFAMILY TPR-like 5 114 IPR011990 GO:0005515
Lan6g0091 383 CDD p23_CS_SGT1_like 188 271 - -
Lan6g0091 383 Pfam SGS domain 301 381 IPR007699 -
Lan6g0091 383 PANTHER PROTEIN SGT1 HOMOLOG 4 383 IPR044563 GO:0051087
Lan6g0091 383 PANTHER PROTEIN SGT1 HOMOLOG A 4 383 - -
Lan6g0091 383 SMART tpr_5 37 70 IPR019734 GO:0005515
Lan6g0091 383 SMART tpr_5 71 104 IPR019734 GO:0005515
Lan6g0091 383 SMART tpr_5 3 36 IPR019734 GO:0005515
Lan6g0091 383 ProSiteProfiles CS domain profile. 182 271 IPR007052 -
Lan6g0091 383 SUPERFAMILY HSP20-like chaperones 179 277 IPR008978 -
Lan6g0091 383 Gene3D Tetratricopeptide repeat domain 2 127 IPR011990 GO:0005515
Lan6g0091 383 ProSiteProfiles SGS domain profile. 292 383 IPR007699 -
Lan6g0091 383 Gene3D - 183 274 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0091 Lan-Chr6 611790 615863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0091 13 95 U-box Gene Family AT3G07370 32.530 2.71e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0091 K12795 - gmx:100784022 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0117 17 678829 682601 Lan6g0091 6 611790 615863 LSH