Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan6g0088 | ATGAACGATTCAAATGTCTCCAAACAAATCCAGCAAATGGTGCGTTTTATCCAGCAAGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTCTCCGCCGAAGAAGAATTCAACATCGAGAAGTTGCAGTTGGTTGAAACAGACAAGAAGAAGATTCGCCAAGAGTACGAGCGCAAAGAGAAGCAAGTTGATATTCGCAAGAAGATTGAGTACTCAATGCAATTGAATGCTTCTCGGATAAAAGTTCTCCAGGCACAAGATGACGTTGTTAATAATATGAAAGATGCTGCAGCGAAGGAACTTTTGAATGTGAGCGGTGATCATCATGTGTACAGAAATATTCTAAAGGATCTCATACTTCAGAGTTTGCTGAGGCTGAAAGAGCCTTCAGTCTTATTGCGATGCCGGGAAGATGACCTGCAATTGGTAGAGTCTGTGTTGGATTTAGCTGTCCAGGAATATGCTGAAAAAGCAAATGTTCATCCACCAGAGATTATTGTTGACAAAGAAGTCTATCTTCCACCTGCACCCAGCGATGATGATTCACATGCTCTCCACTGCTCTGGAGGGGTGGTCATGGCTTCTCGAGATGGAAAAATTGTGTTTGAAAATACGCTTGATGCAAGATTGGATGTGGTGTTCCGTAAGAATCTTCCAGAGATCCGCAAGCAGCTCTTTGCAGGAGCTGCTGCTTGA | 693 | 0.4358 | MNDSNVSKQIQQMVRFIQQEAEEKANEISVSAEEEFNIEKLQLVETDKKKIRQEYERKEKQVDIRKKIEYSMQLNASRIKVLQAQDDVVNNMKDAAAKELLNVSGDHHVYRNILKDLILQSLLRLKEPSVLLRCREDDLQLVESVLDLAVQEYAEKANVHPPEIIVDKEVYLPPAPSDDDSHALHCSGGVVMASRDGKIVFENTLDARLDVVFRKNLPEIRKQLFAGAAA* | 231 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan6g0088 | 230 | Gene3D | - | 1 | 62 | - | - | |
| Lan6g0088 | 230 | Coils | Coil | 7 | 27 | - | - | |
| Lan6g0088 | 230 | SUPERFAMILY | V-type ATPase subunit E-like | 87 | 225 | - | - | |
| Lan6g0088 | 230 | Coils | Coil | 41 | 61 | - | - | |
| Lan6g0088 | 230 | Hamap | V-type proton ATPase subunit E [atpE]. | 8 | 226 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Lan6g0088 | 230 | PANTHER | BNAC03G72900D PROTEIN | 1 | 220 | - | - | |
| Lan6g0088 | 230 | PANTHER | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 220 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Lan6g0088 | 230 | Gene3D | - | 92 | 229 | IPR038495 | - | |
| Lan6g0088 | 230 | Pfam | ATP synthase (E/31 kDa) subunit | 16 | 225 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan6g0088 | Lan-Chr6 | 592901 | 596411 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan6g0088 | 1 | 230 | Primary Pumps ATPases(2) | AT4G11150 | 75.652 | 4.82e-126 | 354 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan6g0088 | K02150 | - | qsu:112031179 | 377.867 |