Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0086 ATGTTCATGTTCAACATGGAAAAATACACTCGCTACGTTACACACACGAAACTTGTGAGAGAAGAAGAGTTAGTGAAGAAGCGTTCATACCCTAAGGTTGTGAGAATAACTGTCACAGACACCGATGCCACTGACTCCTCCAGCGATGAAGAACAGCGTGAATGCTCCACGCGCCACCGTCGTCCCACAAAGTTCGTCAACGAGATTATTTTCAAGTCTTTCGAGAAAGACGGCGTCGTTTCACGGAAGAGAAAGAGAGCCAAGGCTAAGTCTAATGCGCTTGGAAAAGCAAGGGTTTCGGTGAGTCGGTTACCGGAAAAGGTTAACTCCGGTAAGAAATTCCGGGGAGTGAGACAGAGACCGTGGGGGAAATGGGCGGCGGAGATAAGAGACCCAGTTCGACGTGTGCGGTTGTGGTTAGGAACCTATAACACTGCCGAGGAAGCTGCAATGGTGTACGACAACGCCGCCATTATGCTACGTGGACCACACGCGCTCACCAATTTCAAAACTCCACCAACTCAGAACAAAACACCATTAACCATAAGCCACGGTTATATATCTGTAGAAGAATCTCATAACAAGACTAGTTCGTGTTCTCCTACTTCTGTTCTTCACTGTTGTTCCTTACTACAAGAATCTGTCTCTTTAACCGCTAAGGATAATAATGCGTGTGAATATTTATGTGCTTCAAAGAATTCGTTAGAAACGGTTAAACACAAAACTGAGTCAGTTGAAGAAGTGTTTGGAAGTTCAAACGACACAGTATTTGATGTTCAAGTTTCCTCGCCGACACATGATATATTTGACAAAAATCATAACTTTCAAGAAAGTGTGTTCTTCAATGATGATTGGGGCAGTGATATGTTCCTCAGTTCTTCTGAGGATTTGGATTTGGATTTGGGTTTCAAGGGTTGGCATGATAAGGTTAATGATTGGGACACTGATAGTTTTCTTGTTTCTTCTAATGATTTGGATTTGGGTTTCAAGGATTACCAAGATAAGAATGGTGATTTTTTCCAAGATAGTAGTAGCGATTTATTTTTTTCAGATCCACTTGTTGCTGTTTGA 1071 0.4248 MFMFNMEKYTRYVTHTKLVREEELVKKRSYPKVVRITVTDTDATDSSSDEEQRECSTRHRRPTKFVNEIIFKSFEKDGVVSRKRKRAKAKSNALGKARVSVSRLPEKVNSGKKFRGVRQRPWGKWAAEIRDPVRRVRLWLGTYNTAEEAAMVYDNAAIMLRGPHALTNFKTPPTQNKTPLTISHGYISVEESHNKTSSCSPTSVLHCCSLLQESVSLTAKDNNACEYLCASKNSLETVKHKTESVEEVFGSSNDTVFDVQVSSPTHDIFDKNHNFQESVFFNDDWGSDMFLSSSEDLDLDLGFKGWHDKVNDWDTDSFLVSSNDLDLGFKDYQDKNGDFFQDSSSDLFFSDPLVAV* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0086 356 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Lan6g0086 356 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 352 - -
Lan6g0086 356 CDD AP2 112 169 IPR001471 GO:0003700|GO:0006355
Lan6g0086 356 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Lan6g0086 356 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Lan6g0086 356 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 6 352 - -
Lan6g0086 356 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Lan6g0086 356 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Lan6g0086 356 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Lan6g0086 356 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0086 Lan-Chr6 579921 581307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0086 8 356 AP2-EREBP Transcription Factor Family AT4G23750 35.789 5.08e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan6g0086 AP2 5.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0086 - - lang:109350372 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0108 17 615965 617000 Lan6g0086 6 579921 581307 LSH
Lan6g0086 6 579921 581307 Lan6g1235 6 12597643 12599539 PCT