Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0075 ATGGTTTCCTTAACCCACTCATGTTTATTTTTCATCATTCTTTTCCATCTTCACATCATCACAAAAGGAGAGATTTGTGAAATCATGTCATGTGGAGAAATTGATATTCAATTTCCTTTCAGTTTAAAAGGGGCCAATTACAAAGGTGGTCGTTGTAACTACCCAGACCCAAGTTTCCAACTTTCATGCGACAACCTTAGCCGTACGATTCTGACACTCCCACATTCTGGGAATTTGTTAGTTAAAAAGATCAATTACGAGGAACAAATTATTCAAGTCAACGACCCAAATGAATGTCTCCCAAAACGTTTCTTACAAAACTTAACCTTTTCCATTTCCATTCCTTTCATCTTTGATGTCACTGTTTATGATTTCTATAACCTTGTTTTCGTAAAGTGCCCTTCCAATATAACTGACTCAATTTCACTTCCTTCAATTTCTTGTCTTCAAGAAACAAACTCTTCTTTTTTATATTATTCATTTTTTCGAAGTTATGTGAATGTGTCAGATTCATCATCGCTATTCTATGGGTGTGAGGTGATTTCTGCTAGTGTTGTTGTTCCCTTTCCAAATATGCTGACGTGGCCAATATGGCCAAATCTGAACAGTGATATTGAGTTGATATGGGACAGACCCATTTGTGGGGATTGTGCTGCTCGTTCTCAACTTTGTGGCTTTGTGGATGCTTCAACTTCTCAAGTTGGATGCATCTCTGACCCTAACCATACTACAGGTCTTTCAAGAAGTCTCAAATATGGTTTAAGTATTGGAGTGGGAATACCTGCACTTTTATGCATAATCGGGCTTTCTTGCTTTATTTGCAAGAAGTTCAAGATTCATCACAGGCCCAACACAGAGCTACCCAATAATATCTCTGTTTTCACTCTTCAGCTTCAACCTAGTAATTTATTGGCGGGCCTTGATGGGCCTGAGATTGAGAAGTTTCCAAAGACTCTTATTGGTGAAAGTGGGCGATTACCCAAGCCCAGTAATAATATGTGTCCAATATGCTTATCTGAATATGAGCCCAAGGAAATGTTAAGGACAATACCTGAATGCAACCATTATTTTCATGCACTATGTATAGATGAGTGGCTTAAGATGAATGCTACATGTCCCTTGTGTAGGAATTCACCAGATGCAGCATCCTCTAATGTTGCCTCCATAGATGATCCAAGTCCAAATCACACACTTCATACAGCTTAG 1206 0.3856 MVSLTHSCLFFIILFHLHIITKGEICEIMSCGEIDIQFPFSLKGANYKGGRCNYPDPSFQLSCDNLSRTILTLPHSGNLLVKKINYEEQIIQVNDPNECLPKRFLQNLTFSISIPFIFDVTVYDFYNLVFVKCPSNITDSISLPSISCLQETNSSFLYYSFFRSYVNVSDSSSLFYGCEVISASVVVPFPNMLTWPIWPNLNSDIELIWDRPICGDCAARSQLCGFVDASTSQVGCISDPNHTTGLSRSLKYGLSIGVGIPALLCIIGLSCFICKKFKIHHRPNTELPNNISVFTLQLQPSNLLAGLDGPEIEKFPKTLIGESGRLPKPSNNMCPICLSEYEPKEMLRTIPECNHYFHALCIDEWLKMNATCPLCRNSPDAASSNVASIDDPSPNHTLHTA* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0075 401 SMART ring_2 334 375 IPR001841 -
Lan6g0075 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 381 IPR013083 -
Lan6g0075 401 ProSiteProfiles Zinc finger RING-type profile. 334 376 IPR001841 -
Lan6g0075 401 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 395 - -
Lan6g0075 401 Pfam Wall-associated receptor kinase galacturonan-binding 26 95 IPR025287 GO:0030247
Lan6g0075 401 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 395 - -
Lan6g0075 401 SUPERFAMILY RING/U-box 333 378 - -
Lan6g0075 401 Pfam Ring finger domain 332 376 IPR001841 -
Lan6g0075 401 CDD RING-H2_PA-TM-RING 334 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0075 Lan-Chr6 506929 509007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0075 26 379 C3H Transcription Factor Family AT2G25410 36.712 3.88e-55 184