Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0066 ATGAGTAGTTGGAGTAGTAGTACTTGTTCATCGCTGCATCAAGTTACAAACACAAAGAAGAAGTTGAATGGTGTTCGACGTAGAAAATGGGGCAAGTGGGTATCTGAGATTCGTGTTCCAGGAACACGACAACGTTTGTGGTTAGGTACTTATGCTACGGCGGAAGCTGCGGCGGTGGCACATGACGTGGCAGTGTATTGTCTAAGAAAGCCTTCTTCTTCTTCTTTATTATTGGAAAAACTCAACTTTCCTCAGACATTGTCTTCTTATGGTTTCCAAAATAGAAATGATGACATTTCACCAAAGTCAATTCAGAAGGTTGCTTCTGATGTTGGAATGGATGTTGATGCCAGAAACATTGCAGGAAAAACAAGTACGGTAGTTGTAGAACAAAGTAAATATGAGAAGAAAAATGATGATGATGATGATGATTGTGATTTATTATGGTGGGAGAATTTGGGTGATGATTCTCAAGGAAGTGAAGAAGATGGTTGTAGAGAAGGGAAGGCCTTGAACATTTCAGTAGAAGATTATCTTTAA 540 0.3926 MSSWSSSTCSSLHQVTNTKKKLNGVRRRKWGKWVSEIRVPGTRQRLWLGTYATAEAAAVAHDVAVYCLRKPSSSSLLLEKLNFPQTLSSYGFQNRNDDISPKSIQKVASDVGMDVDARNIAGKTSTVVVEQSKYEKKNDDDDDDCDLLWWENLGDDSQGSEEDGCREGKALNISVEDYL* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0066 179 SUPERFAMILY DNA-binding domain 22 73 IPR016177 GO:0003677
Lan6g0066 179 Pfam AP2 domain 22 70 IPR001471 GO:0003700|GO:0006355
Lan6g0066 179 CDD AP2 20 51 IPR001471 GO:0003700|GO:0006355
Lan6g0066 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 139 - -
Lan6g0066 179 Gene3D AP2/ERF domain 21 86 IPR036955 GO:0003700|GO:0006355
Lan6g0066 179 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Lan6g0066 179 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Lan6g0066 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 13 139 - -
Lan6g0066 179 SMART rav1_2 21 90 IPR001471 GO:0003700|GO:0006355
Lan6g0066 179 ProSiteProfiles AP2/ERF domain profile. 21 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0066 Lan-Chr6 419818 442577 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0066 19 156 AP2-EREBP Transcription Factor Family AT1G71520 52.899 4.05e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan6g0066 AP2 1.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0066 - - gmx:100816257 171.014