Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0061 ATGGACATGGGTTCCAATTCAACCCAAACTGGTGCTGCCACTTCTGCATATAGAGGTGTACGCAAAAGAAAATGGGGGAAATGGGTCTCTGAAATTCGCGAACCTGGCACCAAAACCAGAATCTGGTTAGGGAGCTTCGAGACTCAGGAGATGGCTGCAGCTGCATATGACATGGCAGCATTGCATTTCAGGGGCAAGGAAGCGAGGCTCAACTTCCCTGAACTTGCAGCCACGCTTCCTCGCCCCATGAGTAACAATGCTGACCACATTCGCATGGCTGCCCAAGAGGCTGCCCTGAAGTCCAGGACTAATTCATACCTAACTACAAAGCCGCCTGATGGTGGTGGTGGTGATAATGATGGTTCTTCATCTAATTCGATAGGGAGAGTACGACTTTCCCCTAGTCAGATTCAGGCCATCAATGACTCGCCTCTAGACTCACCCAATATGTGGTTGCAAACACAAGATACTTTCATGTTGGATGATCAGTCTATGATGTTTACTAATAATGGTTATGACTATATGCCCTTTGATGAGGAGGAGAATGAGTGGGAGAATATGCATAATAGTTCTCTATGGGATCCTTAG 588 0.4711 MDMGSNSTQTGAATSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETQEMAAAAYDMAALHFRGKEARLNFPELAATLPRPMSNNADHIRMAAQEAALKSRTNSYLTTKPPDGGGGDNDGSSSNSIGRVRLSPSQIQAINDSPLDSPNMWLQTQDTFMLDDQSMMFTNNGYDYMPFDEEENEWENMHNSSLWDP* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0061 195 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Lan6g0061 195 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Lan6g0061 195 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Lan6g0061 195 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Lan6g0061 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 194 - -
Lan6g0061 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 7 194 - -
Lan6g0061 195 MobiDBLite consensus disorder prediction 101 128 - -
Lan6g0061 195 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Lan6g0061 195 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Lan6g0061 195 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Lan6g0061 195 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0061 Lan-Chr6 406891 407532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0061 15 195 AP2-EREBP Transcription Factor Family AT1G71450 55.978 2.75e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan6g0061 AP2 6.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0061 - - gmx:100801245 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1140 18 16286324 16286884 Lan6g0061 6 406891 407532 LSH