Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0057 ATGGATGAAGTTAAGAAGCATAAGTCAAGGAAAGATGGGGATTCTAAGCGGAGTCACCGTGATCCAGATCGTACTGCGGATAAGAGAGATTCTGAGAGCCGGCGACATGAGAAAGACAAGAATAGTGATTCTGAAGATAGGTATGATAGAGATAGGGAGAAACGTAAGGATAAGGAAAGGACGCGAGTCAAGGATGTCGATAAAGATCGAACTCGAGAGAAGAAAGTCGAAAGAGATAGGGAGGACAAGGAAAGGGAGAGGAGTGATAGGGTGAGAGAAAAAGAAAGAGATAAGGTTAAGGAGAAGAAACGAGAGAAAGAAAGGGAAAGGGAGAGGGAAAGGGAGAAGGAAAGGGAGAAGGAAAGGGAGAGGGAAAGAGAAAGGGAGAGGGAAAGGGAAAGGGAGAGGGAGAGGGAGAGGGAAAGGAAGGAGCGTGTGAGGGAGAAGGAAATAGAAAGAGAAAAAGGGAGGAGAGGACATGAGAGGGAGAAGCGTAGGAACGTTGATAACAAAAACAGCGATGATGAATCGAGGGAGAGAGATAGGAAGCGGCATAGGAAAGATGACGATGATGTTTACAAGGGGCGAGATAGGGAAAGGATTGTCAGCAAGTCGCACAGGCAAACTGAGAATACTGAAGCTAGCCCAAGGAAGAAGAGCAGTGAAGATGAGGATGGTACTAAAGATGATGAGAGTAAACCTACCCGTGAAGAGGAGATGGAGATTGAACAAAGGAGATTGGACGATGAAATGGAAAAGAGGCGGAGGAGAGTTCAAGAGTGGCAAGAGCTTAAGAGGAAGAGAGAAGAAACAGAAAGAGAAAAGCAAGGTGAAGCCAGTGCTGATGAACCTGAGTCGAGAAAGACCTGGACCCTTGAAGGGGAATCTGATGATGAAGAAGGACCGGCTGCTGGGAAGCAGGACACAGCTATGGATGTAGATGAAGATGAAAAACCTGCTGACGAGGGACCTACGGATTTGGTGGTAAGTCATGATAATGGAACAGTTGCGTCCGACTTACAGGATGGAAATACTGGTGCTCCTGAAGATGAAGAAATCGATCCATTGGATGCTTTCATGAATTCTATGGTTCTTCCTGAAGTTGAAAAGCTGAACAATGCTGCAGCCTTGTCACTTACTGATAAAGCTGCTGACTTGAATCCCAAGGATAAGGAGGATGAGCAAAGTCGTGGTGGACAGGCAAGGAAAGGTTCAAATAAATCAATAGGGAGAATAATTCCCGGTGAAGAGTTTGACTCAGATTATGCAGATCTTGAATTTGAGGGGGATCCATCCGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCTGAGAAGCTTTCTATAGTTGACCACTCGAAAATTGATTATATGCCATTCAAGAAAAACTTTTTTATTGAAGTGAAAGAGATATCGAAGATGACTCTTGAAGAAGTTGCATTATATAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGCACCAGACTGGACTTACCAGCAAAATTTTGGAGACAATAAAGAAGATGAACTATGAAAAGCCGATGCCAATTCAAGCTCAGGCGCTGCCAATAATCATGAGTGGTCGAGACTGCATAGGCATTGCTAAAACTGGTTCCGGCAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATTAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCCACAAGGGAGCTTGTTCAACAGATTCACAGTGACATAAAGAAGTTTTCAAAGGTAATGGGTATCAGGTGCGTGCCTGTCTATGGAGGTTCTGGTGTCGCTCAACAAATTAGTGAGTTGAAACGCGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATCGACATACTATGCACCAGTAGTGGAAAAATAACCAACCTGCGTCGAGTCACTTATCTGGTTATGGATGAGGCTGATCGAATGTTTGACATGGGATTTGAACCTCAAATTACACGAATTGTTCAGAATATCCGGCCCGATCGTCAAACGGTTCTCTTCTCTGCTACCTTCCCCCGCCAGGTCGAAATTCTGGCTCGTAAGGTGTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATCACACAGACTGTTGAGGTGAGGCCGGAAAATGAGAGGTTCTTTAGACTCTTAGAAATATTGGGGGAATGGTGTGAGAAAGGAAAGATTTTGATATTTGTTCACTCACAGGAGAAATGTGATGTTTTGTTCAAGGATTTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCATGGGGCGAAGGATCAGACAGACCGTGAATCAACAATTTCTGATTTTAAAACCAATGTTTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGACGTCAAGGAGCTTGATTTGGTCATTAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGTGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATCTGTTAAAAGCCTTGGAGCTATCTGAGCAGATTGTTCCCAATGACCTGAAAGCTCTTGCTGATAGCTTTATGGCGAAAGTGAATCAAGGACTTGAGCAAGCCCACGGAACTGGTTATGGAGGCAGTGGATTTAAATTTAATGAAGAGGAAGACGAGGTGAGGAAAGCAGCAAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGACGGTATCAGGAAGGCAGGTGGTGACATCTCACAACATCCGGCTCTTGCTCAGATTCTTGCTGCCCAGAAAGTGAATTCTCCAGCAATGCCGACTCCCATCTCCGTGGGCCAGTCAATTTCAAATGGTGGGCTACCTTCTTTGTCGGCTGTTCTTGGTCTCCAGACCGCAACAGTCTTGCCTGGGAATGATGTGGCAGCTCGAGCAGCATTAGCTGCTATAAACCTGCAGCACCACTTAGCAAAGATACAATCTGAAGCATTGCCAGAGCATTATGTGGCCGAGTTGGAGATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTGACACACAAGGATACTTTAGGCCCTATTTCTGACTGGACTGGAGCTGCAATTACCACTAGGGGGCAGCATTTTCAACCTGGCAAGGTCCCGGGACCTGGAGAACGCAAACTGTACTTGTTCATTGAGGGTTCCAGTGAGCAGTCTGTTAAGAGAGCTAAAGCAGAGTTGAAGCATGTTTTGGAAGACTTCACAAATTTGCAACTTCCTGGTGGAACTCAACCCGGCAAATACTCTGTTGTATGA 3399 0.4484 MDEVKKHKSRKDGDSKRSHRDPDRTADKRDSESRRHEKDKNSDSEDRYDRDREKRKDKERTRVKDVDKDRTREKKVERDREDKERERSDRVREKERDKVKEKKREKEREREREREKEREKERERERERERERERERERERERKERVREKEIEREKGRRGHEREKRRNVDNKNSDDESRERDRKRHRKDDDDVYKGRDRERIVSKSHRQTENTEASPRKKSSEDEDGTKDDESKPTREEEMEIEQRRLDDEMEKRRRRVQEWQELKRKREETEREKQGEASADEPESRKTWTLEGESDDEEGPAAGKQDTAMDVDEDEKPADEGPTDLVVSHDNGTVASDLQDGNTGAPEDEEIDPLDAFMNSMVLPEVEKLNNAAALSLTDKAADLNPKDKEDEQSRGGQARKGSNKSIGRIIPGEEFDSDYADLEFEGDPSDEDDDEFMKRVKKTKAEKLSIVDHSKIDYMPFKKNFFIEVKEISKMTLEEVALYRKQLELKIHGKDVPKPVKSWHQTGLTSKILETIKKMNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFSKVMGIRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQTVEVRPENERFFRLLEILGEWCEKGKILIFVHSQEKCDVLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKTNVCNLLVATSIAARGLDVKELDLVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLLKALELSEQIVPNDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALAQILAAQKVNSPAMPTPISVGQSISNGGLPSLSAVLGLQTATVLPGNDVAARAALAAINLQHHLAKIQSEALPEHYVAELEINDFPQNARWKVTHKDTLGPISDWTGAAITTRGQHFQPGKVPGPGERKLYLFIEGSSEQSVKRAKAELKHVLEDFTNLQLPGGTQPGKYSVV* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0057 1132 MobiDBLite consensus disorder prediction 382 413 - -
Lan6g0057 1132 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 885 IPR001650 -
Lan6g0057 1132 Gene3D - 456 713 IPR027417 -
Lan6g0057 1132 MobiDBLite consensus disorder prediction 1 313 - -
Lan6g0057 1132 Coils Coil 237 264 - -
Lan6g0057 1132 SMART ultradead3 523 728 IPR014001 -
Lan6g0057 1132 CDD SF2_C_DEAD 725 855 - -
Lan6g0057 1132 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 659 667 IPR000629 -
Lan6g0057 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 886 IPR027417 -
Lan6g0057 1132 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 181 959 - -
Lan6g0057 1132 SMART helicmild6 765 846 IPR001650 -
Lan6g0057 1132 Coils Coil 66 149 - -
Lan6g0057 1132 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 504 532 IPR014014 GO:0003724
Lan6g0057 1132 Gene3D - 714 888 IPR027417 -
Lan6g0057 1132 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 181 959 - -
Lan6g0057 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 715 IPR027417 -
Lan6g0057 1132 MobiDBLite consensus disorder prediction 384 400 - -
Lan6g0057 1132 MobiDBLite consensus disorder prediction 920 934 - -
Lan6g0057 1132 CDD DEADc_DDX46 493 714 - -
Lan6g0057 1132 Pfam DEAD/DEAH box helicase 529 700 IPR011545 GO:0003676|GO:0005524
Lan6g0057 1132 MobiDBLite consensus disorder prediction 920 951 - -
Lan6g0057 1132 MobiDBLite consensus disorder prediction 1 352 - -
Lan6g0057 1132 Pfam Helicase conserved C-terminal domain 741 846 IPR001650 -
Lan6g0057 1132 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 535 713 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0057 Lan-Chr6 374859 379947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0057 491 866 Eukaryotic Initiation Factors Gene Family AT3G19760 32.095 5.19e-57 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0057 K12811 - gmx:100784306 1595.87