Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0049 ATGTTGGGGAGAACACAAAGGTGCAGTGATGAAAGTGGTTTGAAGAAAGGGCCATGGAGCCCAGAAGAGGATGAAATATTGGTGGAATACATTGAGAGACATGGACATGGGAGTTGGAGTGCACTTCCAAAGGTTGCAGGATTGAACAGATGTGGAAAAAGTTGCAGGCTAAGGTGGAACAATTATCTCAGGCCTGATATCAAAAGAGGAAAATTCTCTCAACAAGAAGAACAACTCATTATCAATTTACATGCACTTTTAGGGAATAAGTGGGCAGCTATAGCAGGTCATTTGCCAGGGAGAACCGATAATGAAATCAAAAACTTCTGGAACACGCATTTAAAGAAAAAACTGATCCAAATGGGATTAGATCCAATTACTCATATTCCAAGATCAGATCACCAAAATCTTCTTACCAATCTACAACAGATTTTGGCAAATGCAAGCATTTTCAGCACTTTATCAAACACTTGTGATAATACTAATAATGCTCTAAGGCTATTACCCTCAGATGCCACACAACTAGCCAAACTCCACTTGCTACACAATATAGTTCAATATAATCCTTTTGAAGTTTTAGGATTGAATAATGACTCTAACCTCCAAAGCTTTTGCAATGGTACTTCAATTGGTTTTCCTTCTCAAAATCAATTACCCAACTTGCATAACTTTGAAACACTTCAGCACTTGAATGGTTCCACAAGTGTTGCACACACACCATCATCAAATTCAGTACTTCCAAATCAGGTTTCAGCCTCACCTGAAGAATGTTATTATTCCACAGTCAACTTTGATTGCATGGATGTAGAAACAAGTGATGTTTATTGGAAAGATCTTATTGAGTAA 846 0.3783 MLGRTQRCSDESGLKKGPWSPEEDEILVEYIERHGHGSWSALPKVAGLNRCGKSCRLRWNNYLRPDIKRGKFSQQEEQLIINLHALLGNKWAAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGLDPITHIPRSDHQNLLTNLQQILANASIFSTLSNTCDNTNNALRLLPSDATQLAKLHLLHNIVQYNPFEVLGLNNDSNLQSFCNGTSIGFPSQNQLPNLHNFETLQHLNGSTSVAHTPSSNSVLPNQVSASPEECYYSTVNFDCMDVETSDVYWKDLIE* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0049 281 SMART sant 68 116 IPR001005 -
Lan6g0049 281 SMART sant 15 65 IPR001005 -
Lan6g0049 281 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Lan6g0049 281 MobiDBLite consensus disorder prediction 1 20 - -
Lan6g0049 281 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lan6g0049 281 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lan6g0049 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lan6g0049 281 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lan6g0049 281 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 254 - -
Lan6g0049 281 Gene3D - 13 69 - -
Lan6g0049 281 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lan6g0049 281 CDD SANT 71 114 IPR001005 -
Lan6g0049 281 PANTHER MYB TRANSCRIPTION FACTOR 6 254 - -
Lan6g0049 281 CDD SANT 18 63 IPR001005 -
Lan6g0049 281 Gene3D - 71 118 - -
Lan6g0049 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0049 Lan-Chr6 319684 320782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0049 2 208 MYB Transcription Factor Family AT5G16770 61.353 4.07e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan6g0049 Myb_DNA-binding 3.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0055 17 289259 290341 Lan6g0049 6 319684 320782 LSH