Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0016 ATGGAGAGGGATCCAGATGAGTGGCTCCCTGAGAGGAAAGGGCAGAAGAGGAAACAACTTGACCAAAATGATTTCCATTTCCCTTCTCAGATCTGTATCTCCGAACAAGTTTCCATTCTCAATTCCACTTTCTCTTCCAACCTTTCTCATCGCGCCGCTGCTAAACGCGCCACTCACCTCCTCGCCGATCTCGCCAAAAACGAGGAAGTAGTTCACGACATTGTTGAAGGAGGAGCAATTCCGGCTTTGGTTATGCATCTTCAACCACCTCCGTTGGATCAAAATGATCGTTTTCTGAACCCATTGCCCTTTCAGCACGAGGTCGAGAAAGGGAGCGCATTCGCACTTGGTCTTCTTGCCGTCAAGCCAGAACATCAACAATTGATTGTTGACAATGGTGCCTTAAAATACCTCGTTGATCTTTTGAAGAGGCACGACAATGTCCTAACATCTCGTGCTGTTAATAGTCTCATCCGTAGGGCTGCAGATGCCATTACTAATCTTGCTCACGAGAACAGCACCATTAAAACCCGTGTCAGGATGGAAGGCGGGATTCCACCTCTTGTTGACTTGCTTGAAGTTGCTGATACGAAGGTACAAAGAGCAGCAGCCGGTGCATTGCGGACCCTGGCTTTTAAAAATGATGAAAATAAAAACGAGATTGTTGAATACAATGCTCTTCCAACTTTGATTTTAATGCTTCGTTCAGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATCGGAAATCTGGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGTGCTTTACAACCTGTTATTAGATTACTTAGCTCCTGCTGCTCTGAAAGCCAGAGGGAAGCAGCTTTGTTACTTGGACAATTTGCTGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCAGTCAGACCTCTAATAGAGATGCTTCAGTCACCTGATGTACAGCTCAAAGAAATGTCTGCCTTTGCACTGGGGAGATTGGCCCAGGACTCACATAACCAAGCAGGTATTGCACATGATGGTAGCTTAATGCCATTGCTGAAGCTTCTCGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGCGACTTCAGGAAGGAGAGTTTATAGTTCAAGCAACTAAGGATTGTGTGGCAAAGACATTGAAAAGATTAGAAGAAAAAATTAGTGGACCTGTGCTGAACCATCTGTTACAGCTTATGCGAGATTCAGAAAAGGCTTTCCAAAGACGTGTTGCTTTGTCTCTTGCTCATCTTTGTTCTGTGGCTGATCAGAGAAAAATATTTATTGATCACCATGGTTTGGAGTTGCTTATTGGGCTTCTTGGCTCTTCCAGCCCTAAGCAGCAGCTTGATGGTGCAGTGGCTTTATGGAAGTTGGCCAATAAAGCTATGACTTTGTCTCCTATCGATGCTGCCCCCCCGTCACCAACACCCCAGGTCTATTTAGGGGAGCAGTATGTAAACAATTGTAGTGTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATATGCCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATCGGGAGAAGGATGCAAGGGACATAGAGATTCCAAATATCAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTTACTCTTCATATTGCCCAAGATCTCCTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACGATTGCACAGGATATATCTCTGGAGAATGTGTCAAGTATGTATGAACTTTCAGAAGCTTTTAATGCCATATCGTTGAGGCATACATGCATCCTTTTTATTTTGGAGCAATTTGATAAATTGAGTGCAAGACACTCTCTTTTAATCCAGCGTGTAATGCCAGAGATTCGGAATTACTTTGTTAAAGCTCTTACAAAGACCAATTCTCGCATCCAGCCATAG 2073 0.4327 MERDPDEWLPERKGQKRKQLDQNDFHFPSQICISEQVSILNSTFSSNLSHRAAAKRATHLLADLAKNEEVVHDIVEGGAIPALVMHLQPPPLDQNDRFLNPLPFQHEVEKGSAFALGLLAVKPEHQQLIVDNGALKYLVDLLKRHDNVLTSRAVNSLIRRAADAITNLAHENSTIKTRVRMEGGIPPLVDLLEVADTKVQRAAAGALRTLAFKNDENKNEIVEYNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIRLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDSHNQAGIAHDGSLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQEGEFIVQATKDCVAKTLKRLEEKISGPVLNHLLQLMRDSEKAFQRRVALSLAHLCSVADQRKIFIDHHGLELLIGLLGSSSPKQQLDGAVALWKLANKAMTLSPIDAAPPSPTPQVYLGEQYVNNCSVSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLHIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEQFDKLSARHSLLIQRVMPEIRNYFVKALTKTNSRIQP* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0016 690 SUPERFAMILY POZ domain 518 620 IPR011333 -
Lan6g0016 690 ProSiteProfiles BTB domain profile. 526 593 IPR000210 GO:0005515
Lan6g0016 690 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 685 - -
Lan6g0016 690 Gene3D - 282 505 IPR011989 -
Lan6g0016 690 Gene3D Potassium Channel Kv1.1; Chain A 508 652 IPR011333 -
Lan6g0016 690 SMART arm_5 298 338 IPR000225 GO:0005515
Lan6g0016 690 SMART arm_5 256 296 IPR000225 GO:0005515
Lan6g0016 690 SMART arm_5 67 121 IPR000225 GO:0005515
Lan6g0016 690 SMART arm_5 453 494 IPR000225 GO:0005515
Lan6g0016 690 SMART arm_5 339 379 IPR000225 GO:0005515
Lan6g0016 690 SMART arm_5 172 212 IPR000225 GO:0005515
Lan6g0016 690 SMART arm_5 214 254 IPR000225 GO:0005515
Lan6g0016 690 SMART arm_5 122 170 IPR000225 GO:0005515
Lan6g0016 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 183 IPR000225 GO:0005515
Lan6g0016 690 Gene3D - 155 281 IPR011989 -
Lan6g0016 690 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 685 IPR044282 -
Lan6g0016 690 SMART BTB_4 526 623 IPR000210 GO:0005515
Lan6g0016 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 350 392 IPR000225 GO:0005515
Lan6g0016 690 CDD BTB_POZ_ARIA_plant 513 628 - -
Lan6g0016 690 Pfam Armadillo/beta-catenin-like repeat 298 337 IPR000225 GO:0005515
Lan6g0016 690 Pfam Armadillo/beta-catenin-like repeat 214 253 IPR000225 GO:0005515
Lan6g0016 690 Pfam Armadillo/beta-catenin-like repeat 179 211 IPR000225 GO:0005515
Lan6g0016 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 351 IPR000225 GO:0005515
Lan6g0016 690 SUPERFAMILY ARM repeat 156 494 IPR016024 -
Lan6g0016 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 225 267 IPR000225 GO:0005515
Lan6g0016 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 218 IPR000225 GO:0005515
Lan6g0016 690 Gene3D - 32 154 IPR011989 -
Lan6g0016 690 Pfam BTB/POZ domain 519 621 IPR000210 GO:0005515
Lan6g0016 690 SUPERFAMILY ARM repeat 49 158 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0016 Lan-Chr6 140424 147292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0016 156 389 U-box Gene Family AT1G23030 28.571 3.83e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lan6g0016 BTB 2.3e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0016 - - gmx:100812456 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1172 18 16465608 16481164 Lan6g0016 6 140424 147292 LSH