Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0001 ATGGAAGACGAAGACGAACAAGTGGTATCTCTGTCTTCTTCTTCTTCTTCCGATTCAGGCTATGACGAATACTCCGTCGAAGACGATAAAGAACGCAAATCTCAGAATGTGGATGCTCTCCTCAGTGGAAAGTTGATAGTGAAGAGGCAATCGTTGGTACCGCAAGTTCTATCAGTTCCACTTTGTAGAAAACCCTTCAAACCTCCATGTTCCTCTTCCAATTACAACGAACACCTTAGTCGGAGGCTTTCCCTCCGTAAAAGGTTTGTTCCTTGGAGACAACAACAAGATTCTGTCTTGCTTGAAACCACCAACATACACTTCAATAATACAGACCTTGTACAAAAACAAGAACAAGTGGAGAATCTTTGTTTGCCCCCTGGGATTGATCCTCTAATACTGTGGGACCCTCCTCAAGGTCATGACCACCAACCAATTTCTGTTCACCCTTTGCTTGTTCGTTTCCTTCGTCCTCATCAGAGGGAAGGAGTTCAGTTTATGTTTGATTGTGTCTCTGGCCTACATAGTTCTGCCAATATCCATGGATGCATTTTGGCTGATGATATGGGTTTGGGAAAGACATTGCAATCCATCACTTTACTTTATACTCTACTTTCTCAAGGCTTTGATGGAAATCCAATGGTTAGAAGGGCCATCATTGTCACCCCTACCAGCCTTGTTACTAATTGGGAAGCTGAAATCAATAAGTGGCTTGGATCTAGAATTCATCTTGTTGCTCTTTGTGAAAGCACAAGAGAAGATGTCATCTCTGGGATTCAAAATTTTACAAGTACCCGTACCATATTACAGGTGCTGATTGTTTCATATGAGACATTCAGAATGCACTCTTCAATGTTCAGCTCCACTGACTCTTGTGACCTTCTCATATGTGACGAGGCTCACAGACTGAAAAATGATCAGACAATAACCAACCGGGCATTAGCTGCTCTACCATGCAAACGTAGAATTTTGTTGTCAGGAACTCCTTTGCAGAATGACTTAGCAGAATTCTTTGCAATGGTTAACTTCTCCAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGGTACTATGAGGCACCAATTATTTGCGGAAGAGAACCTACTGCCACTGCAGAAGAGAAGAAGCTAGGTGTTGGACGCTCCACAGAATTAAGTATCAAGGTTAATCAGTTCATATTAAGAAGGACTAATGCGTTATTGTCGAATCACTTACCACCAAAGATAATTGAAGTTGTTTGCTGCAAGTTGTCTCCACTACAGTCAGAGCTATATAAACATTTTATACAGTCAAAAAATGTTAAACGGGCAATTACTGAAGAAGTGAAGCAATCCAAGATTTTGGCCTACATAACAGCTCTCAAGAAGTTGTGCAATCATCCAAAGCTTATATATGATACCATCCGAAGTGGGAGCCCAGGAACTTCAGGTTTTGAGGACTGCATTCGATTTTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCATGGACCGGAGGGAATGGAGCTTGGGTTGAACTATCTGGGAAAATGCATGTCTTAGGAAGATTACTTGCTCATTTACGTCAGAGGACAAATGATCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTCGATCTTTTTGCTCAATTGTGTCGGGAACAAAGGTACCCTCATTTGAGACTTGATGGCACTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGACCCATCTAAGGATGAATTTGTTTTTCTGCTAAGCAGCAAGGCCGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGACCCCGATTGGAATCCAGCAAACGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGGCAGAAAAAAAGAGTTTATGTTTATAGATTTTTGACTGCCGGAACAATTGAAGAAAAGGTCTATCAGCGTCAGATGTCAAAAGAAGGGTTGCAAAAGGTCATTCAACAGCAGCAAACAGATAGCATTGCGGCACAGGGTAACTTACTTTCAACAGAGGATCTTCGTGATTTATTCACTTTTCATGAGAGTATCAAGTCAGAGATCCATGAAAAGATGCGATGCACACGGTGTCCAACATACGATGGGCCCGAAAGCACTGACGAGAAGTATGCGGCATCTCAATCAACAATAATGAATTGTGAACCTGATGAAGAAACCTGTGATATAGGTGGATTTGCAGGAATTGCAGGCTGCTTAGAGAAGTTAAAAAGATCAGAGAAGCAGGTTGGATGTCCATTGGAAGAAGATTTGGGTAGCTGGGGACATCATTTTGTCCCAACTTCTGTCCCAGATGCTATCCTCCAGGCTTCAGCGGGTGATGAGGTGACTTTTATTTTCACAAACCAAATTAACGGAAAGCTGGTACCCATTGAGTCCACCATCACTCCGGAGTTGCAACAAAAAGAACCAAATAATGAAATACTCCTCAAGTCAAAGCTGAACGTCAGACATTCTTTACATAATAAACTACCACTACGGGTACGGGGTGTTGCTACTACTAGTACAACATCTTCCTTTCTTAAACCTTCTTCGATTAAGGAAGCACTGCATTCTGTCAGAATTACAAAAAATATCTCAGCATCTCCTGTAATTAATTCATTACCACGAAAAAGATCATGTCCTACTAATATAAGTAATGATGATGATTATCTCGATTAA 2694 0.4154 MEDEDEQVVSLSSSSSSDSGYDEYSVEDDKERKSQNVDALLSGKLIVKRQSLVPQVLSVPLCRKPFKPPCSSSNYNEHLSRRLSLRKRFVPWRQQQDSVLLETTNIHFNNTDLVQKQEQVENLCLPPGIDPLILWDPPQGHDHQPISVHPLLVRFLRPHQREGVQFMFDCVSGLHSSANIHGCILADDMGLGKTLQSITLLYTLLSQGFDGNPMVRRAIIVTPTSLVTNWEAEINKWLGSRIHLVALCESTREDVISGIQNFTSTRTILQVLIVSYETFRMHSSMFSSTDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLAEFFAMVNFSNPGILGDIAHFRRYYEAPIICGREPTATAEEKKLGVGRSTELSIKVNQFILRRTNALLSNHLPPKIIEVVCCKLSPLQSELYKHFIQSKNVKRAITEEVKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGNGAWVELSGKMHVLGRLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCREQRYPHLRLDGTTSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLTAGTIEEKVYQRQMSKEGLQKVIQQQQTDSIAAQGNLLSTEDLRDLFTFHESIKSEIHEKMRCTRCPTYDGPESTDEKYAASQSTIMNCEPDEETCDIGGFAGIAGCLEKLKRSEKQVGCPLEEDLGSWGHHFVPTSVPDAILQASAGDEVTFIFTNQINGKLVPIESTITPELQQKEPNNEILLKSKLNVRHSLHNKLPLRVRGVATTSTTSSFLKPSSIKEALHSVRITKNISASPVINSLPRKRSCPTNISNDDDYLD* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0001 897 PANTHER SNF2/RAD54 FAMILY MEMBER 40 787 - -
Lan6g0001 897 Gene3D - 134 396 IPR038718 -
Lan6g0001 897 SMART ultradead3 152 355 IPR014001 -
Lan6g0001 897 MobiDBLite consensus disorder prediction 1 33 - -
Lan6g0001 897 CDD DEXHc_RAD54 156 397 - -
Lan6g0001 897 Gene3D - 397 704 IPR027417 -
Lan6g0001 897 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 675 IPR001650 -
Lan6g0001 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 792 IPR027417 -
Lan6g0001 897 Pfam Helicase conserved C-terminal domain 517 624 IPR001650 -
Lan6g0001 897 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 40 787 - -
Lan6g0001 897 CDD SF2_C_SNF 508 636 - -
Lan6g0001 897 Pfam SNF2-related domain 159 465 IPR000330 GO:0005524|GO:0140658
Lan6g0001 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 397 IPR027417 -
Lan6g0001 897 Gene3D - 419 688 - -
Lan6g0001 897 SMART helicmild6 541 625 IPR001650 -
Lan6g0001 897 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 347 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0001 Lan-Chr6 36437 43623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0001 180 684 RAD5 or RAD16-like Gene Family AT1G02670 25.046 4.81e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan6g0001 SNF2_N 6.7e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0001 K10875 - gmx:100781631 1347.03