Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1263 ATGGTAGAGATCAGTGAAAGATGGGGAAAAAGTGCAGCTTTGAAGTTGAAGATAGCAGACCTCACCAAAACAAATACAGAGGCTTCAGCCATGAACGTTGAGAGTGTGCAAAGGGTAAGTATCCCTCCACCACAGCCATTCTTTATGTCTCTAAAGTACAATCTCAAAGAGACTTTCTTCCCTGATGACCCTTTCAAGCACTTCAATAACCAGACACCTTTAAAGAGGTTATTGCTTACCCTTCAATACTTCTTCCCTATATTCCAATGGGCTCCACACTACACCTTCAATTTCTTGAAATCAGACATCATTTCTGGCATCACCATTGCTACTTTGGCTATTCCTCAAGGCATTAGTTATGCTAAGCTCGCCAACCTCCCTCCAATTCTTGGACTTTATTCGAGCTTTATCCCACCAATGGTTTATGCGATGATGGGTAGCTCAAAGGATTTGGCAGTGGGAACAATGGCAGTTGGATCACTTCTTATGGCATCAATGTTGGCGAGTGTGGTTAATCCAAATCAGAACCCTAAACTTTTTCTCCACCTTGCTTTCACTGCTACATTCTTTGCTGGACTCTTCCAAGCATTATTTGGTCTCTTTAGGCTAGGTTTGATCGTGGATTTTCTGTCACATGCAGCCATAGTAGGGTTCATGGGAGGAGCAGCCACTGTGGTTTGTCTGCAACAACTGAAGTCCATTCTTGGACTTCAACATTTCACTCACCACTCTGATATTCTATCAGTAATGCGATCTGTTTTCACTCAAACTCATGAGTGGAGGTGGGAAAGCGCTATTTTAGGATGCTGCTTTATTTTATTCCTCATGGCCACAAGATATTTCAGCAAACGACAACCGAGGTTGTTCTGGATGTCAGCACTGGCACCATTAACATGTGTTATTTTAGGAAGCTTGTTGGCTTATTTCACTCACGCTGAGAAGCATGGCATTCAAGTGATAGGAGAATTAAAGAAGGGGCTAAATCCACCTTCAATCAGAGATTTGGTGTTTGTGTCACCTTATATGACCACAGCCATCAAAACTGGTCTTATAACTGGCATCATTGGACTAGCGGAGGGAATAGCAGTGGGAAGAAGCTTTGCAATTTTTAAGAATTACCATATTGATGGCAACAAAGAGATGATTGCTTTTGGAACCATGAACATAGTTGGTTCCTTCACCTCTTGCTACATCACATCAGGACCATTTTCGCGTACAGCTGTGAACTACAACGCGGGCTGCAAGACTGCAGCATCAAACATTGTAATGGCAGTTGCAGTGATGTTGACATTGTTATTCTTGACACCCTTGTTCTATTATACTCCTTTGGTTGTGCTAGCATCCATACTTGTATCTGCAATGCTTGGACTCATAGATTATGAAGCAGCCATTCATTTGTGGAAAATTGATAAATTTGATTTCCTAGTTTGCATCAGTTCATATATTGGAGTGGTCTTCGGCAGTATTGAAATTGGCTTAGTCATAGCAGTGGGGATATCTGTACTTAGAGTACTTTTATTTGTTGCTAGGCCAAAGACATTTGTTCAAGGCAACATTCCAAACTCTGGAGTATATAGAAATGTGGAACAATATCCAAATGCAAACCATATTCCTGGAATCCTAATTCTTGAAATTGGTGCGCCAATTTACTTTGCCAATGCAAGCTATTTAAGAGAGAGGATCACAAGGTGGATTAATGAAGAGGAAGACAGAATTAAAGCTATAGGGAATAGTAATACCAATTTGCAGTATGTTATAATGGATATGACTGCTGTTGCGAACATCGATACAAGTGGAATAAGCATGCTTGAAGAGCTCAACAACATTTTTGGCAGAAGAGGGCTACAACTTGTTTTGGTCAATCCTAGAAGCGAGGTGATGAAGAAACTCAACAAAGCCAAGTTCCTTGATGAAATAGGCCACTCATGGATTTACCTTACAGTTGAAGAAGCTGTTGGAGCATGCAACTTCTTTCTCGACACATGCAAACCAATCCACACAAAAGATGAATCAGAAGGGGGTAGCAATGTCTGA 2034 0.4115 MVEISERWGKSAALKLKIADLTKTNTEASAMNVESVQRVSIPPPQPFFMSLKYNLKETFFPDDPFKHFNNQTPLKRLLLTLQYFFPIFQWAPHYTFNFLKSDIISGITIATLAIPQGISYAKLANLPPILGLYSSFIPPMVYAMMGSSKDLAVGTMAVGSLLMASMLASVVNPNQNPKLFLHLAFTATFFAGLFQALFGLFRLGLIVDFLSHAAIVGFMGGAATVVCLQQLKSILGLQHFTHHSDILSVMRSVFTQTHEWRWESAILGCCFILFLMATRYFSKRQPRLFWMSALAPLTCVILGSLLAYFTHAEKHGIQVIGELKKGLNPPSIRDLVFVSPYMTTAIKTGLITGIIGLAEGIAVGRSFAIFKNYHIDGNKEMIAFGTMNIVGSFTSCYITSGPFSRTAVNYNAGCKTAASNIVMAVAVMLTLLFLTPLFYYTPLVVLASILVSAMLGLIDYEAAIHLWKIDKFDFLVCISSYIGVVFGSIEIGLVIAVGISVLRVLLFVARPKTFVQGNIPNSGVYRNVEQYPNANHIPGILILEIGAPIYFANASYLRERITRWINEEEDRIKAIGNSNTNLQYVIMDMTAVANIDTSGISMLEELNNIFGRRGLQLVLVNPRSEVMKKLNKAKFLDEIGHSWIYLTVEEAVGACNFFLDTCKPIHTKDESEGGSNV* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1263 677 Pfam STAS domain 531 651 IPR002645 -
Lan5g1263 677 PANTHER SLC26A/SULP TRANSPORTER-RELATED 31 675 - -
Lan5g1263 677 SUPERFAMILY SpoIIaa-like 533 655 IPR036513 -
Lan5g1263 677 Gene3D STAS domain 510 657 IPR036513 -
Lan5g1263 677 Pfam Sulfate permease family 99 478 IPR011547 GO:0016021
Lan5g1263 677 TIGRFAM sulP: sulfate permease 86 651 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lan5g1263 677 PANTHER SULFATE TRANSPORTER 31 675 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lan5g1263 677 CDD STAS_SulP_like_sulfate_transporter 531 648 - -
Lan5g1263 677 ProSiteProfiles STAS domain profile. 530 655 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1263 Lan-Chr5 26310086 26320578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1263 29 664 Inorganic Solute Cotransporters AT4G02700 66.405 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1263 K17471 - gmx:100791091 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0531 9 8121593 8127312 Lan5g1263 5 26310086 26320578 LSH
Lan5g1263 5 26310086 26320578 Lan20g0180 20 1171069 1185476 PCT
Lan20g0180 20 1171069 1185476 Lan5g1263 5 26310086 26320578 PCT