Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1262 ATGAACTATTTATACCCACTGAAAGAAGAATACTGGGAACAACCATCATCATCAATATATCACATAGAAAATAGTGATGATCAATCAATGGTTCCTCTTCCTCCTCCACAACCAATGGAGGGTCTTCATGAAGGAGGTCCACCTCCATTTCTAACAAAAACATTTGATGCAGTGGATGACCCAACCACCAATCACACAGTTTCATGGAGCAGAAATGGTGCTAGCTTTGTTGTATGGGACCCACATGCTTTCTCTAGGACCCTCCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGACAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGATTCCTTAGAGGGCAAAGGAACCTATTAGCTAACATAAGGAGAAGAAAAGCACCTTCACAACCTAGTCATCCTTTGCAACAGCAAGCACAACAAGACCACTGTGTTGAAGTTGGAAGTTTTGGATTAGACGAAGAGATTGATCGATTGAGGCGCGATAAACAAGTGTTAATGATGGAGCTTGTGAAGCTTAGACATCAACAACAGCATACAAGATCTTATCTTCAGGAAATGGAGGAAAGGTTACGAGGGACAGAGATGAAGCAGCAACAAATGATGGCTTTCTTAGCTAGAGCTATGAGAAATCCAACTTTTATTCAGCAACTAGTTCAACAGAAAGAGAAGAGAAAGGAACTTGAAGAGGCCATCACTAAGAAGAGAAGAAGACCAATTGATCAAGGACCAAGTAGTAGTGTGAAAGTTGAGCCAGTGGAGTTTGGTGAATATGGATATGGAGTGTCAGAACTTGAAATGCTGGCCATGGAAATGCAAGGTTTTGGTAGAGGGATGAGAGAACATGAGGATGGACATCATGAAGCACTAGAAGAGGAGTCACAAGAGAGGTTGGATAAGGAACTCGATGAAGGGTTTTGGGAAGAACTTTTCAGTGAGAATTTTGAGAGTGAGTTAGACATGCCAATCTCTCAAGGTGATCAAGATGAAGATGTAAATGTTTTGGCTAGTCGCTTAGGTTATTTGGGTTCATGTCCTAAATGA 1086 0.4079 MNYLYPLKEEYWEQPSSSIYHIENSDDQSMVPLPPPQPMEGLHEGGPPPFLTKTFDAVDDPTTNHTVSWSRNGASFVVWDPHAFSRTLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGQRNLLANIRRRKAPSQPSHPLQQQAQQDHCVEVGSFGLDEEIDRLRRDKQVLMMELVKLRHQQQHTRSYLQEMEERLRGTEMKQQQMMAFLARAMRNPTFIQQLVQQKEKRKELEEAITKKRRRPIDQGPSSSVKVEPVEFGEYGYGVSELEMLAMEMQGFGRGMREHEDGHHEALEEESQERLDKELDEGFWEELFSENFESELDMPISQGDQDEDVNVLASRLGYLGSCPK* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1262 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 351 IPR027725 -
Lan5g1262 361 Gene3D - 43 140 IPR036388 -
Lan5g1262 361 Coils Coil 232 252 - -
Lan5g1262 361 Pfam HSF-type DNA-binding 50 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan5g1262 361 Coils Coil 170 190 - -
Lan5g1262 361 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 17 351 - -
Lan5g1262 361 SMART hsfneu3 46 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan5g1262 361 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan5g1262 361 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan5g1262 361 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan5g1262 361 SUPERFAMILY "Winged helix" DNA-binding domain 46 139 IPR036390 -
Lan5g1262 361 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1262 Lan-Chr5 26307232 26310361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1262 31 359 HSF AT3G22830 56.486 9.42e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan5g1262 HSF_DNA-bind 7.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1262 K09419 - gmx:100811798 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0529 9 8098789 8102829 Lan5g1262 5 26307232 26310361 LSH
Lan5g1262 5 26307232 26310361 Lan9g0529 9 8098789 8102829 PCT
Lan9g0529 9 8098789 8102829 Lan5g1262 5 26307232 26310361 PCT