Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1261 ATGGACATTCCCTCTCACGGCGGTGCCGGAGCCCTCCGTTCCCGGAGCTCCCAATCCACATCCCCTTCTCACTCTGCCTCGGCCTCCGCCACTTCCTCCGTCCACAAACGCAAACTTCCTTCCTCATCCGAAGGCCATGCTCCTCCCTTCCCTCCTTCCTCTTTTGACGGTGCCCTCACCTCGAATGACGACCTCCAGAGCATCTCCGCCCGAGGAAACGACTCCGCATCTGAAGACAACTCCGAAGAAGATGCCGTGGTCGATGATGATGAAGACGAGTTCGATCACGGCCACGATTCCTCAATGCGTACCTTCACTACCGCCAGGCTAAATAACAGCAGTAACAGCAACAACCCTAGTTCCGCTTCGAAGAATAGTAAGCTGAAGAGTGATAATAATAATAATATTACCAATTTTAGTGTTAAAATTGAGAATTTTGATGGCGCCGTAGCCAAAGATGGTGTTGGTGGTGCAGAGGGTTCAGCAGCGGGGATTTTGGTGAAGGAGGATGCGGCGATTATATTTACTGATAATTTGCAGACCAGTGGGGCTTACACCGCTAGGGAAGAGAGTCTCAAGAAAGAGGAGGAAGCAGGAAGGCTCAAATTTGTATGCCATTCGAATGACGGTGTTGATGATCATATGGTTTGGTTGATAGGATTGAAGAATATATTTTCTAGACAACTTCCGAATATGCCCAAGGAGTATATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCATAATCACGTCGTTGGAGGCATTACGTATCGCCCATATGCAACCCAGAAGTTTGGTGAGATAGCCTTCTGTGCAATTACAGCTGATGAGCAAGTAAAAGGTTATGGCACCAGATTGATGAATCACTTAAAACAGTTTGCACGTAATTTAGATGGGCTGACACATTTTCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGACAAAGATCGATGGCAAGGTTATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCCAGATTGATCCAAAGCTTCCTTACACTGATTTGTCAACTATGATACGTCGACAGAGGCAGGCAATTGATGAAAAGATCAGAGAGCTGTCAAACTGTCACATTGTTTATCCTGGAATTGATTTTCAGAAGAAGGAAGCTGGTATTCCTAAAAAGATTATCAAAGACATCCCTGGTTTAAGGGAGGCTGGATGGACTTCCGATCAGTGGGGTCATTCACGTTTCAGAACTTCAAGTGCTTCCACAGACAGTGCTGCAAATCCAAAACATTTGACTGCTTTTATGCGTTCTCTTCTAAAGTCAATGCACGATCATGCTGATGCTTGGCCATTCAAGGAACCAGTTGATGCACGGGATGTTCCTGATTATTATGATATCATCAAAGATCCAATGGATTTGAAGACAATGAGTAAGAGGGTGGAGTCAGAGCAATATTATGTTACATTTGAGATGTTTGTTGCGGATGTCAGAAGAATGTTTTCGAATGCACGCACTTACAACTCTCCAGAAACCATTTATTACAAATGTTCTACAAGGTTAGAAGCCCACTTTCAAAGCAAAGTGACATTGGGACTACACTCTGGTACCAAAATCCAATAG 1653 0.4404 MDIPSHGGAGALRSRSSQSTSPSHSASASATSSVHKRKLPSSSEGHAPPFPPSSFDGALTSNDDLQSISARGNDSASEDNSEEDAVVDDDEDEFDHGHDSSMRTFTTARLNNSSNSNNPSSASKNSKLKSDNNNNITNFSVKIENFDGAVAKDGVGGAEGSAAGILVKEDAAIIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCHSNDGVDDHMVWLIGLKNIFSRQLPNMPKEYIVRLVMDRSHKSVMVIRHNHVVGGITYRPYATQKFGEIAFCAITADEQVKGYGTRLMNHLKQFARNLDGLTHFLTYADNNAVGYFIKQGFTKEIHLDKDRWQGYIKDYDGGILMECQIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQKKEAGIPKKIIKDIPGLREAGWTSDQWGHSRFRTSSASTDSAANPKHLTAFMRSLLKSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFEMFVADVRRMFSNARTYNSPETIYYKCSTRLEAHFQSKVTLGLHSGTKIQ* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1261 550 MobiDBLite consensus disorder prediction 103 133 - -
Lan5g1261 550 Pfam Bromodomain 447 529 IPR001487 GO:0005515
Lan5g1261 550 Gene3D - 197 361 - -
Lan5g1261 550 MobiDBLite consensus disorder prediction 55 75 - -
Lan5g1261 550 MobiDBLite consensus disorder prediction 1 133 - -
Lan5g1261 550 PRINTS Bromodomain signature 457 470 IPR001487 GO:0005515
Lan5g1261 550 PRINTS Bromodomain signature 471 487 IPR001487 GO:0005515
Lan5g1261 550 PRINTS Bromodomain signature 506 525 IPR001487 GO:0005515
Lan5g1261 550 MobiDBLite consensus disorder prediction 79 95 - -
Lan5g1261 550 ProSitePatterns Bromodomain signature. 459 517 IPR018359 -
Lan5g1261 550 ProSiteProfiles Bromodomain profile. 454 525 IPR001487 GO:0005515
Lan5g1261 550 Pfam Acetyltransferase (GNAT) family 247 326 IPR000182 GO:0016407
Lan5g1261 550 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 221 356 IPR016181 -
Lan5g1261 550 SUPERFAMILY Bromodomain 425 539 IPR036427 GO:0005515
Lan5g1261 550 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 208 355 IPR000182 GO:0016407
Lan5g1261 550 PANTHER BNAC04G26160D PROTEIN 8 550 - -
Lan5g1261 550 SMART bromo_6 435 544 IPR001487 GO:0005515
Lan5g1261 550 Gene3D - 424 542 IPR036427 GO:0005515
Lan5g1261 550 PANTHER GH11602P 8 550 IPR037800 GO:0004402
Lan5g1261 550 MobiDBLite consensus disorder prediction 11 38 - -
Lan5g1261 550 CDD Bromo_gcn5_like 442 539 - -
Lan5g1261 550 CDD NAT_SF 248 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1261 Lan-Chr5 26297959 26305490 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lan5g1261 Bromodomain 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1261 K06062 - gmx:100791610 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0516 9 7976712 7983215 Lan5g1261 5 26297959 26305490 LSH