Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1260 ATGGAGAATGTTAAGGACACAGAATTGAGGTTGGGATTACCAGGCAGTGATGTTGTTAGAAGCAACAAGAGATGTTGTCCCGTCCAAGAATCTATTCTTTCTAATGATTCTGATTCCACTACCACCACAAGTCATGATCATCAACAACATTCTGTCCAACCTTCCAAGGTACAAGTAGTGGGGTGGCCACCTATTAGATCTTTTAGGAAGAACAATCGACAAGAAAAGAAAGGTGATGGAGGTGGAATTTATGTGAAAGTGACCATGGCTGGTGCACCTTACTTGAGGAAAATAGATCTCAAGGTTTACAACAGCTACTCACAACTCCTCAATGCCTTGGAAATTTTGTTCAACTGCACATTTGGTGAATATTCAGAAAGGGAAGGGTACAGTGGATCTGAGTATGTTCCTAGTTATGAAGACAAGGATGGTGATTGGATGCTGGTGGGAGATGTTCCATGGGACATGTTCATGTCATCTTGCAAGAGGCTGAGGATTATGAAAGGATCAGAAGAAAAGGGTTTGGGTTGTTTATAA 537 0.4153 MENVKDTELRLGLPGSDVVRSNKRCCPVQESILSNDSDSTTTTSHDHQQHSVQPSKVQVVGWPPIRSFRKNNRQEKKGDGGGIYVKVTMAGAPYLRKIDLKVYNSYSQLLNALEILFNCTFGEYSEREGYSGSEYVPSYEDKDGDWMLVGDVPWDMFMSSCKRLRIMKGSEEKGLGCL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1260 178 Pfam AUX/IAA family 39 176 IPR033389 -
Lan5g1260 178 Gene3D - 77 178 - -
Lan5g1260 178 MobiDBLite consensus disorder prediction 31 56 - -
Lan5g1260 178 PANTHER AUXIN-INDUCED PROTEIN 3 176 - -
Lan5g1260 178 SUPERFAMILY CAD & PB1 domains 78 168 - -
Lan5g1260 178 ProSiteProfiles PB1 domain profile. 82 169 IPR000270 GO:0005515
Lan5g1260 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 176 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1260 Lan-Chr5 26296364 26297570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1260 74 175 B3 DNA Binding Superfamily AT4G23980 35.294 2.91e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan5g1260 AUX_IAA 7.8e-52 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1260 5 26296364 26297570 Lan20g0167 20 1098700 1099780 PCT
Lan5g1260 5 26296364 26297570 Lan4g1739 4 26070735 26072059 PCT
Lan20g0167 20 1098700 1099780 Lan5g1260 5 26296364 26297570 PCT
Lan4g1739 4 26070735 26072059 Lan5g1260 5 26296364 26297570 PCT