Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1259 ATGGAAGTAATTGGGCTGAAAAAGATGAAGATGGGGTTTGAGGAAACTGAGCTGAGGCTTGGTCTGCCAGGAAATATTGGAGCCACTAGTGAAGGAGATGTGATGAGGAATAAGAGAGGATTCTCTGAAACTGAGACAATTGAAACTGTGGATTTGATGCTTAATCTTTCTTCCAAGGAAGCTACTCCAAATGATGTTAAGAGTTTGGCTAATGAGAAGTCCCTTCTGCCTTCAGATCCTGCCAAGCCCCCAGCAAAGGCTCAAGTGGTGGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGTTAGCAGTGCAAAAGAGCAATAATGAGAATGGAGAGAAGAATGAGAAGAAGAATGAGAAGAAGAACATTACTATTAATAACCCAAATGCAAGCTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTTCGCAAAGTGGACTTGAACATCTACAACACTTACCAACACCTCTCTCATTCCTTAGCCAACATGTTCAGCTCCTTCACCATTGGCAATTGTGGATCCCAAGGAATGAAGGATTTCATGAATCTATTAAACAATTCTGATTATGTCACAACCTATCAAGACAAAGATGGTGATTTGATGCTTGTTGGTGATGTCCCATGGGAGATGTTTGTTAAATCATGCAAGCGCTTGCGTATCATGAAGGGAAAGGAGGCTATTCATCTTGCACCAAGAGCCATGGAGAAATGCAAGAACAGAAGCTAG 735 0.4259 MEVIGLKKMKMGFEETELRLGLPGNIGATSEGDVMRNKRGFSETETIETVDLMLNLSSKEATPNDVKSLANEKSLLPSDPAKPPAKAQVVGWPPVRSYRKNMLAVQKSNNENGEKNEKKNEKKNITINNPNASFVKVSMDGAPYLRKVDLNIYNTYQHLSHSLANMFSSFTIGNCGSQGMKDFMNLLNNSDYVTTYQDKDGDLMLVGDVPWEMFVKSCKRLRIMKGKEAIHLAPRAMEKCKNRS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1259 244 Gene3D - 127 237 - -
Lan5g1259 244 ProSiteProfiles PB1 domain profile. 132 226 IPR000270 GO:0005515
Lan5g1259 244 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 237 IPR003311 GO:0005634|GO:0006355
Lan5g1259 244 Pfam AUX/IAA family 15 235 IPR033389 -
Lan5g1259 244 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 237 - -
Lan5g1259 244 SUPERFAMILY CAD & PB1 domains 126 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1259 Lan-Chr5 26293080 26295079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1259 133 233 B3 DNA Binding Superfamily AT1G19220 29.703 6.59e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lan5g1259 AUX_IAA 1.6e-75 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1259 K14484 - gmx:100810013 321.242