Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1255 ATGAAAGTGAGAAGAGATACGATTGCAGCATGCATGACTTGTACTATCTGTAACAAGCTTTTCAAAGATGCTACTACCATATCTGAATGCCTTCACACGTTTTGCAAGCAGTGCATTTATGATAAAATTACAGAGGAGGAATTGGAATGCTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCACTGGAAAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGTCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGAAGGCACCTGAAGTAGTCCCGTCTGTACCATTACCAGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTTAGCACTCCAAAGGTATCATCTTCACAGGTAAACATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTGGCGGTCTTCGTGCCTCTAGTTTTTCCATCGAAAAGCCAATAAAAAACGAGGACGAATTACTTGAAGATCGTTCAGAGAGTTCAAGCTCACCTGACACTTCAAATAAATTTGCTGAGAATACTGGGCAGAGTTTGTCCCCTTGTGAGGGTAGTCAATCCAAAGCAAATAAACCAACCGAGAGTGGTGCTGAACCATGGGATACAAAATTAGATCTTTGGAAACCTTTGAATTGTTTAGTAGAGGTTGCAAGTAGGACCAAATCTTTCAAGTCTAGTGTGCAAGGATCTGATGCTAAACTAGATCTTCTTCAAGTAAATGAGAGTGACTCTCAAGTAAAGAAAATCAAAAATAAGGAAAATAAACGCAAGGCGAAAGTTGAGGATGAAAAGATTAGCACTTATTCTGTCTCTCCAGATACAGCAAAACCGAAAAAATTGCGCAGAATTCGCCGGAAAAAAGAACCTGCTTTTGGAGAATCACGCATAACATCGCAAGCTATTTTGGATTCGAACAGCACCAAACTCTTACAAAATGGACCTATTTGGTTCTCCTTAGTAGCTTTGGAAAACCAGGAAGGAGATGAACCCTTGCCTCAAATTCCTTCAAGTTATGTGAGAATTAAGGATGGAAGTGTACCTGTGTCATTTATCCAAAAATACTTAATGAAGAAACTAGATCTGAACAGTGAAGCAGAGGTTGAGATTAAATTTATGGGACAAACAGTGGTTCCAACACTAAGACTACATAATTTGGTAGAGTTATGGCTTGATACAATTTCCTCATCACACAGAATTCCAGCAACCATTGGGTCCTCAGCAAAAGATTTTGTAATGGTGTTGGCCTATGCTAGGAAGGTCCCTTACCCTTCAAATTCACAATTTCAATGA 1293 0.3975 MKVRRDTIAACMTCTICNKLFKDATTISECLHTFCKQCIYDKITEEELECCPICNIDLGCVPLEKLRPDHSLQDVRSKVFPLKGRKVKAPEVVPSVPLPARRKERSLSSLVVSTPKVSSSQVNMTGRRTKPTRKAGGLRASSFSIEKPIKNEDELLEDRSESSSSPDTSNKFAENTGQSLSPCEGSQSKANKPTESGAEPWDTKLDLWKPLNCLVEVASRTKSFKSSVQGSDAKLDLLQVNESDSQVKKIKNKENKRKAKVEDEKISTYSVSPDTAKPKKLRRIRRKKEPAFGESRITSQAILDSNSTKLLQNGPIWFSLVALENQEGDEPLPQIPSSYVRIKDGSVPVSFIQKYLMKKLDLNSEAEVEIKFMGQTVVPTLRLHNLVELWLDTISSSHRIPATIGSSAKDFVMVLAYARKVPYPSNSQFQ* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1255 430 Pfam Zinc finger, C3HC4 type (RING finger) 14 54 - -
Lan5g1255 430 ProSitePatterns Zinc finger RING-type signature. 30 39 IPR017907 -
Lan5g1255 430 MobiDBLite consensus disorder prediction 162 194 - -
Lan5g1255 430 MobiDBLite consensus disorder prediction 146 161 - -
Lan5g1255 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 420 - -
Lan5g1255 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 105 IPR013083 -
Lan5g1255 430 MobiDBLite consensus disorder prediction 104 202 - -
Lan5g1255 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 420 IPR044807 GO:0004842
Lan5g1255 430 MobiDBLite consensus disorder prediction 107 128 - -
Lan5g1255 430 ProSiteProfiles Zinc finger RING-type profile. 14 55 IPR001841 -
Lan5g1255 430 SMART ring_2 14 54 IPR001841 -
Lan5g1255 430 SUPERFAMILY RING/U-box 9 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1255 Lan-Chr5 26270850 26275074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1255 2 343 C3H Transcription Factor Family AT2G30580 52.874 2.17e-105 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1255 K16277 - gmx:100793731 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0512 9 7942286 7948855 Lan5g1255 5 26270850 26275074 LSH
Lan5g1255 5 26270850 26275074 Lan20g0165 20 1077311 1082390 PCT
Lan20g0165 20 1077311 1082390 Lan5g1255 5 26270850 26275074 PCT