Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1253 ATGGCGTCTGAGGAGCCCATCGTTGCGGTGGAGGTGCCGGAATCCACCATAGTCAACGCCGCTGACCAATCCGCCGTCGAGACTACCGAGCCGGAGAAGCCTGCTGTCAAGGAGCCCAAACCCAAGGCTCCTCGGAAACCTAAGAACTCTTCTCATCCAACCTACGAAGTGATGATCAAGGATGCGATTGTTAGTCTGAAAGAGAGAACTGGTTCGAGCCAATACGCGATAGCGAAGTTTGTAGAAGATAAGTACAAGGATCTTCCATCCAATTTCAGGAAGATTCTATTGAACCAACTTAAGAAGCTCGTTTCTTCTGGCAAACTCACTCAGCTCAAAAACTCCTTCAAGCTTCCATCTGCTGCTTCTACTCCTAACCCCACCCTCGCAAAGAAGCCCGCAGCTCCAAAGCCCAAAGCAAAGCCCGCTTCTAAGCCTAAGCCTGCTGCGAAAGCAAAGCCAGCTGCTAAGCCCAAGGCTGTTGCTACTGCTGTGAAGCCCAAGGCTGCTGCTAGGCCCGCCAAGGCTTCGAGGACATCCACCAGGACTTCTCCTAGTGGTAGGAAGCCACCTGCTACAAGAGTAACTCCGGCGAAGAAGACTGTTCAGGCCAAGAAGGCAGCTCCAGCGAAGAGTGTAAAGTCTTCGGCGAAGAGGGTGGCACCAAAGAGAGGATGA 678 0.5265 MASEEPIVAVEVPESTIVNAADQSAVETTEPEKPAVKEPKPKAPRKPKNSSHPTYEVMIKDAIVSLKERTGSSQYAIAKFVEDKYKDLPSNFRKILLNQLKKLVSSGKLTQLKNSFKLPSAASTPNPTLAKKPAAPKPKAKPASKPKPAAKAKPAAKPKAVATAVKPKAAARPAKASRTSTRTSPSGRKPPATRVTPAKKTVQAKKAAPAKSVKSSAKRVAPKRG* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1253 225 MobiDBLite consensus disorder prediction 110 127 - -
Lan5g1253 225 Pfam linker histone H1 and H5 family 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan5g1253 225 CDD H15 50 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan5g1253 225 PRINTS Histone H5 signature 38 59 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan5g1253 225 PRINTS Histone H5 signature 65 82 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan5g1253 225 PRINTS Histone H5 signature 141 155 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan5g1253 225 PRINTS Histone H5 signature 205 224 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan5g1253 225 MobiDBLite consensus disorder prediction 176 190 - -
Lan5g1253 225 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 219 - -
Lan5g1253 225 SMART h15plus2 49 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan5g1253 225 SUPERFAMILY "Winged helix" DNA-binding domain 48 132 IPR036390 -
Lan5g1253 225 MobiDBLite consensus disorder prediction 31 45 - -
Lan5g1253 225 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 51 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan5g1253 225 MobiDBLite consensus disorder prediction 19 55 - -
Lan5g1253 225 MobiDBLite consensus disorder prediction 110 225 - -
Lan5g1253 225 Gene3D - 46 124 IPR036388 -
Lan5g1253 225 PANTHER HISTONE H1 2 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1253 Lan-Chr5 26265472 26266689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1253 53 139 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 7.89e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1253 K11275 - twl:120011270 130.568