Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1249 ATGGCTGGTTCTGGTTCACCTTGTGGAGCCTGCAAATTTTTTAAAAGGAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGTCATGAACAAGGTGCTTCCCATTTTTCAGCCATCCATAAAGTGTTTGGTGCAAGCAATGTCTCAAAGCTTCTTCAACACCTCCCCGTGAGTGATCGATGTGAAGCCGCAGTCACAATCTCATATGAAGCTCAAGCTAGAGTACAGGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCTCTCCAACAGCAGGTGGTCAATTTACAAGCACAGCTAGCTTATCTAAGGGAACAAGCAGGTCAAAGTTGTTTCAATCTCTCTGGTGCTGAAAACCCTAATGAGAAATACATTGGAAAATCTACTAGTTCTTTCCCCATGGATCTGCAAAATTGTTTCCAGATGGAAAATCCGAACATGGGTTCACAATTTCTTCCCAACTTTTATAATAATCCTTCAACAACACAACACTATGGAAATACTAAGGACCAAAACCCTATTGGGAACTATGAAAGTTCAGGAACTACCCTTGATGAAAGCATCTCATTTTCTAGCTTTGAGGAGATTTGTAACTCCATGTCCTATGAAATGCAAAGGGAGTGGGGCTTTCACAATGAAAGGGGTCATGACCTTCAGTGA 663 0.4103 MAGSGSPCGACKFFKRKCVRGCVFAPYFCHEQGASHFSAIHKVFGASNVSKLLQHLPVSDRCEAAVTISYEAQARVQDPIYGCVAHIFALQQQVVNLQAQLAYLREQAGQSCFNLSGAENPNEKYIGKSTSSFPMDLQNCFQMENPNMGSQFLPNFYNNPSTTQHYGNTKDQNPIGNYESSGTTLDESISFSSFEEICNSMSYEMQREWGFHNERGHDLQ* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1249 220 MobiDBLite consensus disorder prediction 162 182 - -
Lan5g1249 220 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Lan5g1249 220 Coils Coil 87 107 - -
Lan5g1249 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 202 - -
Lan5g1249 220 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lan5g1249 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1249 Lan-Chr5 26247114 26248181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1249 7 145 AS2 family AT3G58190 68.085 2.35e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lan5g1249 LOB 8.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1249 K13945 K13944 gmx:100816960 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0502 9 7826113 7827586 Lan5g1249 5 26247114 26248181 LSH