Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1247 ATGGATTTTAATTATTCTCTCTACCAATACCAAAACCTTCATTTCTTCCCTTCAAACCATTCCTCTAATTTAGGACAAGAACCTTTCTCATGGGATAATGACTTACTCCTTTTCTTAAACATTACCAACAACGACAATAACCATACTCTTCTCTTCAACTCTAGTGACCCCTCACAATCGCTACAGACCAAAGAATCCTCCTCCATAGAATCCAACTCATCAGGCTCTCAAGGAAGCCTCGACTCACACGATGTTTCATCGATTTGTACATCTTATCATAAAAACAACTCATTACACGATACTTTCACTTGGTGGAATTCAGATATAGTAAATATAAATACCCTTATCCCTACAAATGGAGAAGCTGTACCCAATGCACCACCGCCCCCACTTTCAACACCACTATCACTTCCTTCTTCTTCTTCTTCTTCTTCCTCATCATCTCCACAAATATTGGAAAGCAACAAAGATAAGAGGGTGTTTAGAGGAGTAAGGAGAAGGCCATGGGGTAAATATGCTGCTGAAATAAGAGACTCAACAAGGAATGGAGTTAGAGTATGGATAGGAACTTTTGACACAGCTGAGGAAGCAGCATTAGCTTATGATCAAGCAGCTTTTTGTACAAGAGGTTCCTTGGCAGTGCTTAATTTCCCAATGGAAGTTGTAAGGGAATCCCTTAAAGACATGTCAAATAATTTTAAGCCAAATTCATGTTTGGAAGATGGTTCTTTCACTTCACCTGTTTTAGCACTCAAGAGAAAGCATAGCATGAGAAGAAAGTCAAGTAAGTGTAGTAAAAATAAGAAGACCAAAAGGGTTGACTATAAGGATCAATTGGAGATAAGTGGATCAAAAAATGTGTTGGTTTTGGAGGATTTGGGTGCTGATTATCTTGACCAACTTTTGAGCTTTACTACTACATCTCAAATTCAAACTTCTTTCTAG 945 0.382 MDFNYSLYQYQNLHFFPSNHSSNLGQEPFSWDNDLLLFLNITNNDNNHTLLFNSSDPSQSLQTKESSSIESNSSGSQGSLDSHDVSSICTSYHKNNSLHDTFTWWNSDIVNINTLIPTNGEAVPNAPPPPLSTPLSLPSSSSSSSSSSPQILESNKDKRVFRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEEAALAYDQAAFCTRGSLAVLNFPMEVVRESLKDMSNNFKPNSCLEDGSFTSPVLALKRKHSMRRKSSKCSKNKKTKRVDYKDQLEISGSKNVLVLEDLGADYLDQLLSFTTTSQIQTSF* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1247 314 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Lan5g1247 314 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700|GO:0006355
Lan5g1247 314 Pfam AP2 domain 160 210 IPR001471 GO:0003700|GO:0006355
Lan5g1247 314 Gene3D AP2/ERF domain 160 221 IPR036955 GO:0003700|GO:0006355
Lan5g1247 314 MobiDBLite consensus disorder prediction 120 157 - -
Lan5g1247 314 ProSiteProfiles AP2/ERF domain profile. 160 218 IPR001471 GO:0003700|GO:0006355
Lan5g1247 314 SUPERFAMILY DNA-binding domain 160 220 IPR016177 GO:0003677
Lan5g1247 314 SMART rav1_2 160 224 IPR001471 GO:0003700|GO:0006355
Lan5g1247 314 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 141 306 - -
Lan5g1247 314 MobiDBLite consensus disorder prediction 50 80 - -
Lan5g1247 314 MobiDBLite consensus disorder prediction 136 154 - -
Lan5g1247 314 CDD AP2 161 218 IPR001471 GO:0003700|GO:0006355
Lan5g1247 314 PANTHER DNA-BINDING DOMAIN 141 306 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1247 Lan-Chr5 26234872 26235911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1247 152 302 AP2-EREBP Transcription Factor Family AT3G23240 58.278 3.69e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan5g1247 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1247 K14516 - gmx:100784784 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1247 5 26234872 26235911 Lan4g1239 4 20314304 20314837 PCT
Lan4g1239 4 20314304 20314837 Lan5g1247 5 26234872 26235911 PCT