Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1241 ATGCATATAGGTAAAATGGATACAACTTCAAAGAAATGTCTTATCAACAGCATTTCTCGATTTATTCATCTAGTTTCTTGCCAAAAAGTGAAACCTATGCCCCTTCAGAATAACTGTAATAATATGGTTGGTGTTTTGAAGTGCTTGAAACCAGTGCTTGATGATGTTGTGGATTACAAAATCCCTTTGGATGAAAATCTAAATACAGAATGTGAAGAATTGGATATGCAAGTTAATGAAGCTAGAGAGTTCATCGAAAAATTGAGTTCAAAGATGAGCAAGATTCACGGTGTTCTTCAGAGTGGGGAAATGTTGATTAAATTACAAAGTACTTCACTTGAGATTTGTCACATGCTAGTTAGATGCCTAAACTCACCTCCATATACTTCAGGTTTGGCTAATATTCAGAAATATATGCAGGAACTTCAGTGTCTTAAGAAGGAAACAGCAGTGGTTTATATAGAAAAAGCGCTTAGAAACCAAAGGGATAATGTCAAACCTTGCTATGAAAATCTAAAGGAAATCATTGATTTACTTGAACTCACATCAAACCAGGAGCTCTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGATTGAACACTGAAGTCAATAAAATGAAAGGGGAGTTGGATGAAACTAACCAAATTGTGAATCTTGTCTGTGATTTACGTGATTATGCGATGAAAATTGAGTGCCATGAAATCAGAAGTGGTGTCTCTGTCCCACCATACTTCCGATGTCCATTATCGTTGGAACTCATGCTGGATCCTGTTATTGTAGCTTCAGGTCAGACATACGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGTTAACTGTTTGTCCAAAGACTCATCAGAGACTTACGCATACGAATCTCATTCCTAATTATACCGTGAAAACTATGATAGTGAATTGGTGTGAGGAAAATAATGTCAAACTTCTCGATAACTCGAAGAACGAGAAATTTTCACATATTTCACCCCCCTCGGATCATTTTCCCCAAGATTTAGACCGTGCGTGTAGTTTTGGATCTTCATGTAGTAGCAATTCCACTTCAAAATCGTCTCTTCAAAGTGGAAAGGCATCTGAGAAGAAAAAGGGTGATATCACTTTCAGATTAAGTGGAGAATCCAATGGACTCCAGAGTGGAGAGACAGAAAAGTTTGAGCAGCAATCCTCAGCACCTTCGTGTAGTCACAGCAGAAGTGAATCATTTTCAAGTTCTATTTCCAGTGCTGATTATGTACTTCCAGTTTCAAAAGAGGCATCAAGGGTATCTAATAAGCATCAAAATGTGGAGTTTTCTGGTGAAACCACAAATCGGTGTCCTGCTTCGCCTGCAAGTAAAGAATTGGTAATTTCTCCTTCATTATCAGGAAAGCTATTTGAAAACCTGGGATCAAAAAATGGAAGGATGCAGGATGGAAATAATTATAATAAGAATGATAATATTATCATTCATAGTCATTCAAAAGTTGATTCTCATCCTGTTTCCAACGTACAATCTGATGAAATGACCCCCGCATCTCATGTCAAAAAGTTGATCGAAGACCTTCACAATCATTCAAATGAAGTACAAACTGCTGCTGCAGAAAAATTGAGGCTCCTTACGAAGCATGACATGGAAAACCGTATCATTGCAGGGAAGAGTGGAGCTATCACGCCTTTACTTTCATTGCTATATTCGGATGTGAAGATAACACAAGAGCATGCCGTAACAGCAGTGCTGAATTTGTCGATAAATGAAGACAACAAGGCCTTGATTATGGAAGCAGGAGCCATAGAGCCACTTATTCATGTTTTGAAGACAGGAAATGACGGTGCCAAGGAGAACTCTGCTGCAGCTCTATTCAGCCTCTCTGTAATAGAAAACAATAAGCCGAAAATCGGCCGTTCTGGTGCAGTTAAGGCTTTGGTGAATCTTCTAGCCTCAGGAACTCTCAGGGGAAAGAAAGATGCTGCTACTGCTTTATTTAACCTATCAATATTTCACGAGAATAAAGCTCGTATTGTTCAAGCTGGAGCGGTGAAGTTTCTGGTTCTGCTGTTGGACCCTGAATGTGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCGACAATTTCAGAAGGTCAACTAGAAATTGTGAGGGAAGGGGGCATACCCTTGCTAGTTGAAATTATTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATTCTCTTGCAACTATGTCTTCATAGTCCCAAGTTTTGTACCTTGGTTTTGCAAGAAGGAGCTGTGCCTCCCCTAGTTGCAATATCTCAGTGTGGTACACCAAGAGCTAGAGAAAAGGCACAACAGCTTCTGAGTCATTTTCGTAATCAGCGCGAAGGTGCTAAAGGGAAGGGAAAATCATGA 2397 0.3963 MHIGKMDTTSKKCLINSISRFIHLVSCQKVKPMPLQNNCNNMVGVLKCLKPVLDDVVDYKIPLDENLNTECEELDMQVNEAREFIEKLSSKMSKIHGVLQSGEMLIKLQSTSLEICHMLVRCLNSPPYTSGLANIQKYMQELQCLKKETAVVYIEKALRNQRDNVKPCYENLKEIIDLLELTSNQELLKESIAVEKERLNTEVNKMKGELDETNQIVNLVCDLRDYAMKIECHEIRSGVSVPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTHQRLTHTNLIPNYTVKTMIVNWCEENNVKLLDNSKNEKFSHISPPSDHFPQDLDRACSFGSSCSSNSTSKSSLQSGKASEKKKGDITFRLSGESNGLQSGETEKFEQQSSAPSCSHSRSESFSSSISSADYVLPVSKEASRVSNKHQNVEFSGETTNRCPASPASKELVISPSLSGKLFENLGSKNGRMQDGNNYNKNDNIIIHSHSKVDSHPVSNVQSDEMTPASHVKKLIEDLHNHSNEVQTAAAEKLRLLTKHDMENRIIAGKSGAITPLLSLLYSDVKITQEHAVTAVLNLSINEDNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIENNKPKIGRSGAVKALVNLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPECGMVDKAVALLANLSTISEGQLEIVREGGIPLLVEIIESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVAISQCGTPRAREKAQQLLSHFRNQREGAKGKGKS* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1241 798 MobiDBLite consensus disorder prediction 346 360 - -
Lan5g1241 798 PANTHER U BOX DOMAIN-CONTAINING 11 793 - -
Lan5g1241 798 Coils Coil 513 533 - -
Lan5g1241 798 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Lan5g1241 798 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 793 - -
Lan5g1241 798 MobiDBLite consensus disorder prediction 346 404 - -
Lan5g1241 798 Gene3D - 588 793 IPR011989 -
Lan5g1241 798 MobiDBLite consensus disorder prediction 376 404 - -
Lan5g1241 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 594 636 IPR000225 GO:0005515
Lan5g1241 798 MobiDBLite consensus disorder prediction 425 447 - -
Lan5g1241 798 CDD RING-Ubox_PUB 245 287 IPR045210 -
Lan5g1241 798 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Lan5g1241 798 SMART arm_5 624 664 IPR000225 GO:0005515
Lan5g1241 798 SMART arm_5 542 582 IPR000225 GO:0005515
Lan5g1241 798 SMART arm_5 583 623 IPR000225 GO:0005515
Lan5g1241 798 SMART arm_5 705 745 IPR000225 GO:0005515
Lan5g1241 798 SMART arm_5 665 704 IPR000225 GO:0005515
Lan5g1241 798 Gene3D - 469 587 IPR011989 -
Lan5g1241 798 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Lan5g1241 798 SUPERFAMILY ARM repeat 510 785 IPR016024 -
Lan5g1241 798 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Lan5g1241 798 SUPERFAMILY RING/U-box 239 315 - -
Lan5g1241 798 Coils Coil 189 216 - -
Lan5g1241 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 635 677 IPR000225 GO:0005515
Lan5g1241 798 Coils Coil 71 91 - -
Lan5g1241 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 595 IPR000225 GO:0005515
Lan5g1241 798 Pfam Armadillo/beta-catenin-like repeat 544 581 IPR000225 GO:0005515
Lan5g1241 798 Pfam Armadillo/beta-catenin-like repeat 583 622 IPR000225 GO:0005515
Lan5g1241 798 Pfam Armadillo/beta-catenin-like repeat 627 663 IPR000225 GO:0005515
Lan5g1241 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 676 717 IPR000225 GO:0005515
Lan5g1241 798 MobiDBLite consensus disorder prediction 423 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1241 Lan-Chr5 26208554 26213376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1241 6 798 U-box Gene Family AT3G54790 53.567 0.0 719