Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1239 ATGATGGATCATGTTGTTGGTGGCAAGTTTAAACTTGGAAGGAAAATTGGGAGTGGCTCTTTTGGGGAGCTTTATATAGCTGTTAATGTACAAACTGGAGAGGAAGTAGCTATCAAGCTGGAACCTGTGAAGACCAAGCATCCACAGCTTCACTATGAGTCAAAATTGTATACGCTTCTACAGGGAGGAACGGGGATTCCCCATCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATTGCATGGCTATTGACCTTCTTGGTCCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGCTTCCTTCACCGTGACATAAAGCCCGACAATTTTCTGATGGGCCTAGGACGTAAAGCAAATCAGGTGTACATCATTGACTATGGTCTTGCGAAAAAATATAGGGATCTTAAGACCCATAGGCACATACCATACAGGGAGAACAAGAACCTTACAGGCACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGACAAAATCAGTGAGAAGAAGATATCAACTCGTATAGAGGTGCTCTGCAAGTCATATCCCTCAGAATTTGTTTCATATTTCCATTATTGCCAATCATTGCGGTTTGAGGACAAGCCAGAGTACTCATATTTAAAAAGGCTTTTTCGAGATTTATTCATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTATATTGAAGTATCCACAGATTGGTAGCAGCTCTAGAGGGCGGCATGATAGTGGCAAGGCAGCTATGAATCCAGGACCATCTGTACAAAAGCCAGAAAAGATCTCAGTTGGGAAAGAGATTCGAGAGAAATTCTCTGGTGCTGTTGAAGCATTCTCCAGGAGGAACCCAACAGGTTCTAGCCCTCGTGATGATCACACCAAACATAGGACTTCTGATGAAGTAGCAGTGCGCAAGGATGTGTATCATGGTCAAGAGAAGGGACGCAGTTCGTCTCGATATGGCAGCAGTTCAAGAAGACCAATAGTCCCATCAGCCATTCCAAGTTCCTCAGATGACTATACTGACAGCCGTACTGGCCAGCTGACCTCAAGTGTCATCCGCCCATCTACAGCACAGAGAATCCAACCCATGTATGAGACAAAACAAGCAAGTTTCACACGCGCTGGATCGATTAGAGGCAATCACGATGATCCTCTTCGGAGCTTTGAGCTCCTCTCAATCAGGAAGTAA 1386 0.4343 MMDHVVGGKFKLGRKIGSGSFGELYIAVNVQTGEEVAIKLEPVKTKHPQLHYESKLYTLLQGGTGIPHLKWFGVEGDYNCMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLKTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKISTRIEVLCKSYPSEFVSYFHYCQSLRFEDKPEYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRGRHDSGKAAMNPGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTGSSPRDDHTKHRTSDEVAVRKDVYHGQEKGRSSSRYGSSSRRPIVPSAIPSSSDDYTDSRTGQLTSSVIRPSTAQRIQPMYETKQASFTRAGSIRGNHDDPLRSFELLSIRK* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1239 461 PANTHER CASEIN KINASE I-LIKE PROTEIN 2 449 - -
Lan5g1239 461 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1239 461 CDD STKc_CK1_delta_epsilon 9 283 - -
Lan5g1239 461 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Lan5g1239 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lan5g1239 461 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
Lan5g1239 461 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1239 461 PANTHER CASEIN KINASE-RELATED 2 449 - -
Lan5g1239 461 MobiDBLite consensus disorder prediction 301 414 - -
Lan5g1239 461 SMART serkin_6 10 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1239 461 MobiDBLite consensus disorder prediction 326 340 - -
Lan5g1239 461 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Lan5g1239 461 MobiDBLite consensus disorder prediction 350 378 - -
Lan5g1239 461 MobiDBLite consensus disorder prediction 380 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1239 Lan-Chr5 26194764 26200876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1239 3 214 Miscellaneous Gene Families AT1G29230 27.397 1.65e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan5g1239 Pkinase 1.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1239 K08960 - cam:101493293 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0485 9 7241635 7247884 Lan5g1239 5 26194764 26200876 LSH
Lan5g1239 5 26194764 26200876 Lan20g1000 20 10732484 10739472 PCT
Lan20g1000 20 10732484 10739472 Lan5g1239 5 26194764 26200876 PCT