Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1227 ATGGAGAAGAAACGTGTACGAGTTATGGAAGCCGAAAACAAAGGCAAAGGCCTAATGGCGCCACAAGACTTGGCCACAAATTTAACAGCACTTGTTGTAGATGACGATAAACTTACCCGAATGCTACATCAAAAGTTGCTGAATAAAGCTGGAGTGAAAAACCATGCTGTGGAAAATGGCAAAGAAGCCGTAGACATTCATCGCTCTGCTCAAAGTTTTGACATGATTCTCATGGACAAGGATATGCCTATCATGAATGGAATTGAGGCAACAAAGAAGCTTAGATCAATGGGTATTGGTAGCATGATAATTGGTGTATCATCATCCTCTAAGGAAGAAGAAATAAGAGAGTTTATGGAAGCAGGGTTGAATGATTACAAAGTGAAACCCTTCACCTTCACTATGCTTAGTTCAATTCTTGATAAGATCAATTCATGA 438 0.395 MEKKRVRVMEAENKGKGLMAPQDLATNLTALVVDDDKLTRMLHQKLLNKAGVKNHAVENGKEAVDIHRSAQSFDMILMDKDMPIMNGIEATKKLRSMGIGSMIIGVSSSSKEEEIREFMEAGLNDYKVKPFTFTMLSSILDKINS* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1227 145 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
Lan5g1227 145 SMART REC_2 28 140 IPR001789 GO:0000160
Lan5g1227 145 CDD REC_hyHK_CKI1_RcsC-like 31 140 - -
Lan5g1227 145 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 144 - -
Lan5g1227 145 Gene3D - 16 145 - -
Lan5g1227 145 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 19 144 - -
Lan5g1227 145 SUPERFAMILY CheY-like 27 143 IPR011006 -
Lan5g1227 145 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1227 Lan-Chr5 26132676 26133639 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1227 28 141 Response Regulator Gene Family AT3G04280 46.667 2.02e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan5g1227 Response_reg 1.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1227 - - gmx:100794931 162.54